Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_O22
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.13 |his2||histidinol dehydrogenase His2 |Schizosaccharo...    31   0.12 
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom...    28   0.84 
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    28   1.1  
SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces po...    27   1.5  
SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual      27   2.6  
SPBC11C11.10 ||SPBC3B8.13c|pseudouridine synthase|Schizosaccharo...    27   2.6  
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    25   5.9  
SPBC19G7.16 |iws1||transcription elongation factor complex subun...    25   5.9  
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   7.8  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   7.8  
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ...    25   7.8  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    25   7.8  

>SPBC1711.13 |his2||histidinol dehydrogenase His2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 31.1 bits (67), Expect = 0.12
 Identities = 18/45 (40%), Positives = 25/45 (55%)
 Frame = +1

Query: 205 VVDYAKKKSYDDMLRQVQDSTTDDDLLRISEEMFNADINNAFNYI 339
           ++DYA K     +   V  +  DDDL++IS  M   DI+ AFN I
Sbjct: 54  LIDYASKFEKVQLKSAVLKAPFDDDLMKIS-PMIKEDIDIAFNNI 97


>SPAC6F6.12 |||autophagy associated protein
           Atg24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 28.3 bits (60), Expect = 0.84
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 331 NYIQVSLQGKTSPMSKNDEASSNLLNVPENVWSGPT 438
           NY++  +Q K +  SK DE S +LLN    +   PT
Sbjct: 139 NYVRFFIQPKLNNTSKLDEISDSLLNAFSKLKEEPT 174


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 22/91 (24%), Positives = 39/91 (42%)
 Frame = +1

Query: 253 VQDSTTDDDLLRISEEMFNADINNAFNYIQVSLQGKTSPMSKNDEASSNLLNVPENVWSG 432
           ++  T   DLL++ +++ + D N A + +    +   S +   D A       PEN+   
Sbjct: 549 LEQETIPSDLLKVRKDLLD-DSNAAKDTMDKVKKHLKSLLRVGDTARKEF-TWPENMPKP 606

Query: 433 PTIRPFVALFDNYHKNVIRPEFVTPKEETEQ 525
             +   V     YH+ V+R  F+    E EQ
Sbjct: 607 CEVMQQVVQLMKYHRAVMRENFIILGPEVEQ 637


>SPAC9G1.09 |sid1||PAK-related kinase Sid1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 471

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
 Frame = +1

Query: 175 LQQIGTVVGGVVDYAKKKSYDDML--RQVQDSTTDDDLLRISEEMFNADINNAFNYIQ 342
           L+++G+   GVV  A++    D++  +Q+   T  DD+  I +E+F     N+ N IQ
Sbjct: 12  LRKLGSGSFGVVWKARENVSGDIIAIKQIDLETGIDDITDIEQEVFMLSNCNSSNVIQ 69


>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 272

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +1

Query: 385 EASSNLLNVPENVWSGPTIRPFVALFDNYHKNVIRPEFVTPKEETEQNNV 534
           E  +    + E    GP+ +    L   YH N+I   +  P++E +Q+N+
Sbjct: 52  ECGNTFTQIAEIAGEGPSFKTMSNLAAKYHVNII---YGFPEKEEKQSNI 98


>SPBC11C11.10 ||SPBC3B8.13c|pseudouridine
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 238 DMLRQVQDSTTDDDLLRISEEMFNADINNAFNYIQVSLQG 357
           D+ RQV       DL+R+ +  F  D  N F++ + S  G
Sbjct: 349 DLGRQVNSEAHMVDLVRLKQGSFALDDENCFDFSEFSAPG 388


>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 19/58 (32%), Positives = 33/58 (56%)
 Frame = +1

Query: 25  MRIILILLVSLGLCHADDIAQAAGQIFNSILPNLISNSVTGQQGNTAQNTLQQIGTVV 198
           M + LI+ VS GL   + ++  +   FN +LP +I NS  G + + + N  + IGT++
Sbjct: 73  MVVGLIIRVSPGLIIQNMVSFHSTYFFNVLLPPIILNS--GYELHQS-NFFRNIGTIL 127


>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
           Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +1

Query: 220 KKKSYDDMLRQVQDSTTDDDLLRISEEMFNADINNA 327
           KK+S +D L Q+     DD++LR+ E+M  A + +A
Sbjct: 173 KKRSNEDNLEQM----ADDEVLRLREQMRLAALRDA 204


>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 18  SQNENNFNITGFSRAMSCR*HSSSGWSNI*QY 113
           SQN +++N   F R+   R  S S  SNI +Y
Sbjct: 198 SQNNSHYNDKSFHRSRYSRARSRSPGSNISEY 229


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 6/98 (6%)
 Frame = +1

Query: 148  QQGNTAQNTLQQIGTVVG---GVVDYAKKKSYDDMLRQV---QDSTTDDDLLRISEEMFN 309
            Q+G +    L+  GT +G   G  D     + DD L ++   +D+    DL         
Sbjct: 3899 QEGKSNSGELES-GTGLGSGVGAEDITNTLNEDDDLEELANEEDTANQSDLDESEARELE 3957

Query: 310  ADINNAFNYIQVSLQGKTSPMSKNDEASSNLLNVPENV 423
            +D+N       VS    +    +N +    + ++PE++
Sbjct: 3958 SDMNGVTKDSVVSENENSDSEEENQDLDEEVNDIPEDL 3995


>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 310 ADINNAFNYIQVSLQGKTSPMSKNDEASSNLLNVPENVWSG 432
           +DI  A NY   S+  +T     ++    +  +V +NVW G
Sbjct: 307 SDIRGANNYGWTSILVRTGIFQGDNSPKYSAKHVSDNVWEG 347


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +1

Query: 337 IQVSLQGKTSPMSKNDEASSNLLNVPENVWSGPTIRPFVALFD 465
           + +S    TSP+S +  AS   LN+P  +    +  PF    D
Sbjct: 241 LDLSNSNPTSPVSPSSMASRRGLNIPPTLKQAVSETPFSTFSD 283


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.132    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,225,745
Number of Sequences: 5004
Number of extensions: 42285
Number of successful extensions: 138
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)