Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_O22
(570 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g61480.1 68418.m07714 leucine-rich repeat transmembrane prote... 31 0.41
At1g49040.2 68414.m05499 stomatal cytokinesis defective / SCD1 p... 31 0.72
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p... 31 0.72
At5g15450.1 68418.m01808 heat shock protein 100, putative / HSP1... 30 1.2
At1g04580.1 68414.m00451 aldehyde oxidase, putative similar to a... 30 1.2
At5g17760.1 68418.m02082 AAA-type ATPase family protein contains... 29 1.7
At1g62950.1 68414.m07108 leucine-rich repeat transmembrane prote... 29 2.9
At1g69780.1 68414.m08029 homeobox-leucine zipper protein 13 (HB-... 28 5.0
At5g60450.1 68418.m07582 auxin-responsive factor (ARF4) contains... 27 6.7
At1g71240.1 68414.m08222 expressed protein contains Pfam profile... 27 6.7
At5g58100.1 68418.m07270 expressed protein 27 8.8
At5g24550.1 68418.m02899 glycosyl hydrolase family 1 protein con... 27 8.8
At3g48870.1 68416.m05338 ATP-dependent Clp protease ATP-binding ... 27 8.8
At3g17490.1 68416.m02234 F-box family protein similar to F-box p... 27 8.8
>At5g61480.1 68418.m07714 leucine-rich repeat transmembrane protein
kinase, putative
Length = 1041
Score = 31.5 bits (68), Expect = 0.41
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +1
Query: 319 NNAFNYIQVSLQGKTSPMSKNDEASSNLLN--VPENVWSGPTIRPFVALFDN 468
NN F Q+ T+P+ + S+N + +PEN+W P ++ F A F N
Sbjct: 450 NNRFTD-QIPADFATAPVLQYLNLSTNFFHRKLPENIWKAPNLQIFSASFSN 500
>At1g49040.2 68414.m05499 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 909
Score = 30.7 bits (66), Expect = 0.72
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 259 DSTTDDDLLRISEEMFNADINNAFNYIQ 342
D +T D L +S EMF D NN +Y+Q
Sbjct: 633 DLSTVRDALEVSAEMFKKDANNVSDYVQ 660
>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 1187
Score = 30.7 bits (66), Expect = 0.72
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 259 DSTTDDDLLRISEEMFNADINNAFNYIQ 342
D +T D L +S EMF D NN +Y+Q
Sbjct: 633 DLSTVRDALEVSAEMFKKDANNVSDYVQ 660
>At5g15450.1 68418.m01808 heat shock protein 100, putative / HSP100,
putative / heat shock protein clpB, putative /
HSP100/ClpB, putative similar to HSP100/ClpB GI:9651530
[Phaseolus lunatus]
Length = 968
Score = 29.9 bits (64), Expect = 1.2
Identities = 20/84 (23%), Positives = 34/84 (40%)
Frame = +1
Query: 73 DDIAQAAGQIFNSILPNLISNSVTGQQGNTAQNTLQQIGTVVGGVVDYAKKKSYDDMLRQ 252
D+I +A G +FN L L VT QG T T + + V + DD +
Sbjct: 757 DEIEKAHGDVFNVFLQILDDGRVTDSQGRTVSFT-NTVIIMTSNVGSQFILNNTDDDANE 815
Query: 253 VQDSTTDDDLLRISEEMFNADINN 324
+ T + ++ + +F + N
Sbjct: 816 LSYETIKERVMNAARSIFRPEFMN 839
>At1g04580.1 68414.m00451 aldehyde oxidase, putative similar to
aldehyde oxidases from Arabidopsis thaliana: GI:3172023,
GI:3172025, GI:3172044; identical to cDNA putative
aldehyde oxidase (AO2) mRNA, partial cds GI:2792305
Length = 1337
Score = 29.9 bits (64), Expect = 1.2
Identities = 24/92 (26%), Positives = 40/92 (43%)
Frame = +1
Query: 40 ILLVSLGLCHADDIAQAAGQIFNSILPNLISNSVTGQQGNTAQNTLQQIGTVVGGVVDYA 219
I + GL AD++ +AGQI ++ + ++ + + IGT V V D
Sbjct: 644 ITMFGTGLLFADEVTISAGQIIALVVADTQKHADMAAHLAVVEYDSRNIGTPVLSVEDAV 703
Query: 220 KKKSYDDMLRQVQDSTTDDDLLRISEEMFNAD 315
K+ S ++ + Q D IS+ M AD
Sbjct: 704 KRSSLFEVPPEYQPEPVGD----ISKGMAEAD 731
>At5g17760.1 68418.m02082 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 505
Score = 29.5 bits (63), Expect = 1.7
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Frame = +1
Query: 190 TVVGGVVDYAKKKSYDDMLRQV-QDSTTDDDLL--RISEEMFNADINNAF---NYIQVSL 351
++V + +Y K YD L V +DS LL R + DI+ A N I+ +
Sbjct: 268 SLVAAMANYLKFDVYDLQLASVMRDSDLRRLLLATRNRSILVIEDIDCAVDLPNRIEQPV 327
Query: 352 QGKTSPMSKNDEASSNLLNVPENVWSGPTIRPFVALFDNYHKNVIRPEFVTP 507
+GK S+ S LLN + +WS + +F HK+ + P + P
Sbjct: 328 EGKNRGESQGPLTLSGLLNFIDGLWSSCGDERII-IFTTNHKDRLDPALLRP 378
>At1g62950.1 68414.m07108 leucine-rich repeat transmembrane protein
kinase, putative contains protein kinase domains
Length = 890
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +1
Query: 238 DMLRQVQDSTTDDDLLRISEEMFNADINNAFNYIQVSLQG 357
++L Q +D+ DD ++ + NAD+ N+FN + + +G
Sbjct: 34 EILLQFKDNINDDPYNSLASWVSNADLCNSFNGVSCNQEG 73
>At1g69780.1 68414.m08029 homeobox-leucine zipper protein 13 (HB-13)
/ HD-ZIP transcription factor 13 identical to homeobox
gene 13 protein (GP:12325190) [Arabidopsis thaliana]
Length = 294
Score = 27.9 bits (59), Expect = 5.0
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Frame = +1
Query: 223 KKSYDDMLRQVQDSTTDDDLLRISEEMFNADINNAFNYIQ---VSLQGKT--SPMSKNDE 387
+K YD + RQ ++DLL+ + A+I N Q ++L +T S +++D
Sbjct: 143 EKDYDTLKRQFDTLKAENDLLQTHNQKLQAEIMGLKNREQTESINLNKETEGSCSNRSDN 202
Query: 388 ASSNL 402
+S NL
Sbjct: 203 SSDNL 207
>At5g60450.1 68418.m07582 auxin-responsive factor (ARF4) contains
Pfam profile: PF02362 B3 DNA binding domain; identical
to cDNA auxin response factor 4 (ARF4) GI:4102597
Length = 788
Score = 27.5 bits (58), Expect = 6.7
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +1
Query: 187 GTVVGGVVDYAKKKSYDDMLRQVQDSTTDDDLLRISEE 300
G+ VG +D ++ YDD+L +++ + LLR E+
Sbjct: 674 GSQVGRAIDLSRLNGYDDLLMELERLFNMEGLLRDPEK 711
>At1g71240.1 68414.m08222 expressed protein contains Pfam profile:
PF04842 plant protein of unknown function (DUF639)
Length = 824
Score = 27.5 bits (58), Expect = 6.7
Identities = 13/30 (43%), Positives = 21/30 (70%)
Frame = +2
Query: 185 SVRLSVASLIMLKRKATMTCYVKYRILRRT 274
S L+VA L +++R AT TC KY+++ +T
Sbjct: 562 SKHLAVADLTLVER-ATETCRQKYKVVEKT 590
>At5g58100.1 68418.m07270 expressed protein
Length = 945
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = +1
Query: 145 GQQGNTAQNTLQQIGTVVGGVVDYAKKKSYDDMLRQVQD 261
G +G + +L +GT +G V + ++ ++ D + +QD
Sbjct: 409 GGEGVRTELSLPNVGTTIGAVAEISEDEAEDKLQTAIQD 447
>At5g24550.1 68418.m02899 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to anther-specific protein ATA27 (GI:2746341)
[Arabidopsis thaliana]
Length = 534
Score = 27.1 bits (57), Expect = 8.8
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +1
Query: 385 EASSNLLNVPENVWSGPTIRPFVALFDNYHK-NVIRPEFV--TPKEETEQNNVHQ 540
E LLN +N ++ PTI FD+Y +V R E + T + E QN++ Q
Sbjct: 395 EGLRKLLNYIKNKYNNPTIYITENGFDDYENGSVTREEIIEDTKRIEYHQNHLQQ 449
>At3g48870.1 68416.m05338 ATP-dependent Clp protease ATP-binding
subunit (ClpC) identical to AtClpC GI:5360574 from
[Arabidopsis thaliana]; contains Pfam profiles PF02861:
Clp amino terminal domain and PF02151: UvrB/uvrC motif
Length = 952
Score = 27.1 bits (57), Expect = 8.8
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Frame = +1
Query: 73 DDIAQAAGQIFNSILPNLISNSVTGQQGNTA--QNTLQQIGTVVG-GVVDYAKKKSYDDM 243
D+I +A +FN +L L +T +G T +NTL + + VG V++ ++ D+
Sbjct: 738 DEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDL 797
Query: 244 LRQVQDSTTDDDLLRISEEM 303
+DS+ + ++EE+
Sbjct: 798 DHDEKDSSYNRIKSLVTEEL 817
>At3g17490.1 68416.m02234 F-box family protein similar to F-box
protein family, AtFBX9 (GI:20197985) [Arabidopsis
thaliana]; contains Pfam PF00646: F-box domain and
TIGRFAM TIGR01640: F-box protein interaction domain
Length = 388
Score = 27.1 bits (57), Expect = 8.8
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -1
Query: 186 DLLQCILSRIPLLSSHRIRY 127
DL++ ILSR+P +S R+RY
Sbjct: 9 DLVEEILSRVPAISLKRLRY 28
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.132 0.377
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,460,366
Number of Sequences: 28952
Number of extensions: 212422
Number of successful extensions: 707
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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