Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_O21
         (425 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006610-4|AAK85450.1|  246|Caenorhabditis elegans Hypothetical ...    29   1.1  
Z74042-17|CAA98537.1|  688|Caenorhabditis elegans Hypothetical p...    28   3.2  
AL031623-1|CAA20938.1|  688|Caenorhabditis elegans Hypothetical ...    28   3.2  
Z81533-11|CAE17829.1|  355|Caenorhabditis elegans Hypothetical p...    27   7.4  
U80838-3|AAC71113.1|  453|Caenorhabditis elegans Abnormal cell l...    27   7.4  
AF183400-1|AAF13188.1|  453|Caenorhabditis elegans LIN-42 protein.     27   7.4  
Z81473-3|CAB03896.4|  514|Caenorhabditis elegans Hypothetical pr...    26   9.8  
AY342388-1|AAQ19851.1|  514|Caenorhabditis elegans putative RNA-...    26   9.8  

>AC006610-4|AAK85450.1|  246|Caenorhabditis elegans Hypothetical
           protein C30F12.4 protein.
          Length = 246

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 21  LKTNIYICLAGRCCCWPVCCGSILC*LL*FADA-RASRLKISNNGR 155
           L+  I +CLA  CCC   CC  ++C    + DA  A   K  + GR
Sbjct: 190 LRKKILMCLAV-CCCPLTCCLPLICICCNYVDACGACGKKYGHRGR 234


>Z74042-17|CAA98537.1|  688|Caenorhabditis elegans Hypothetical
           protein T11F9.12 protein.
          Length = 688

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -3

Query: 339 TFFLHSWTLESKYSSEHIVY 280
           T FLH+ T+E+ ++SEH V+
Sbjct: 540 THFLHNVTMENPFNSEHFVW 559


>AL031623-1|CAA20938.1|  688|Caenorhabditis elegans Hypothetical
           protein T11F9.12 protein.
          Length = 688

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -3

Query: 339 TFFLHSWTLESKYSSEHIVY 280
           T FLH+ T+E+ ++SEH V+
Sbjct: 540 THFLHNVTMENPFNSEHFVW 559


>Z81533-11|CAE17829.1|  355|Caenorhabditis elegans Hypothetical
           protein F36G9.16 protein.
          Length = 355

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +2

Query: 188 IIRHIGCFFNCIFRFALQRKYFSEYYLNLFL--*TICSEEYLLSKV 319
           II  IG F N      L RK    Y +NLF+    IC    LLS V
Sbjct: 42  IIAAIGVFINIFHFIVLTRKSMRVYTINLFMIGIAICDFLRLLSVV 87


>U80838-3|AAC71113.1|  453|Caenorhabditis elegans Abnormal cell
           lineage protein 42,isoform c protein.
          Length = 453

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
 Frame = -2

Query: 253 EIFSL*SKPKYAIKKTTNMS--DNCGL*ICRQGV*RPLLLIFNLDARASANHSNQHRILP 80
           E+ ++ +K   AI   T +S  D     +    V   L L F L A    +     RI  
Sbjct: 305 ELRTIMNKVSSAISSVTFLSSGDGASHRLSSSSVLLVLTLHFYLCASLRRDTRLARRIRR 364

Query: 79  QQTGQQQHRPAKQMYMLVFKS 17
           +++GQQ+H   ++++ML  +S
Sbjct: 365 RESGQQRHLSEQKVHMLALRS 385


>AF183400-1|AAF13188.1|  453|Caenorhabditis elegans LIN-42 protein.
          Length = 453

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
 Frame = -2

Query: 253 EIFSL*SKPKYAIKKTTNMS--DNCGL*ICRQGV*RPLLLIFNLDARASANHSNQHRILP 80
           E+ ++ +K   AI   T +S  D     +    V   L L F L A    +     RI  
Sbjct: 305 ELRTIMNKVSSAISSVTFLSSGDGASHRLSSSSVLLVLTLHFYLCASLRRDTRLARRIRR 364

Query: 79  QQTGQQQHRPAKQMYMLVFKS 17
           +++GQQ+H   ++++ML  +S
Sbjct: 365 RESGQQRHLSEQKVHMLALRS 385


>Z81473-3|CAB03896.4|  514|Caenorhabditis elegans Hypothetical
           protein C17D12.2 protein.
          Length = 514

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -2

Query: 145 LLIFNLDARASANHSNQHRILPQQTGQQQHRPAKQMYMLVFKSA 14
           L +  L A A+A  +  + +L QQT QQQ +  +    L  +SA
Sbjct: 271 LHVLQLQAAAAAAQAAANPVLSQQTQQQQQQQQQLAAQLQLQSA 314


>AY342388-1|AAQ19851.1|  514|Caenorhabditis elegans putative
           RNA-binding protein protein.
          Length = 514

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -2

Query: 145 LLIFNLDARASANHSNQHRILPQQTGQQQHRPAKQMYMLVFKSA 14
           L +  L A A+A  +  + +L QQT QQQ +  +    L  +SA
Sbjct: 271 LHVLQLQAAAAAAQAAANPVLSQQTQQQQQQQQQLAAQLQLQSA 314


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,456,136
Number of Sequences: 27780
Number of extensions: 187659
Number of successful extensions: 502
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)