Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_O21
         (425 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g78770.1 68414.m09180 cell division cycle family protein simi...    29   1.3  
At1g35710.1 68414.m04439 leucine-rich repeat transmembrane prote...    29   1.7  
At4g17950.1 68417.m02673 DNA-binding family protein contains Pfa...    27   4.0  
At5g50440.1 68418.m06246 Golgi SNARE protein membrin 12 (MEMB12)...    27   5.3  
At2g36900.1 68415.m04526 Golgi SNARE protein membrin 11 (MEMB11)...    27   5.3  
At5g61160.1 68418.m07673 transferase family protein similar to a...    27   7.0  
At4g03175.1 68417.m00434 protein kinase family protein contains ...    27   7.0  
At2g40120.1 68415.m04934 protein kinase family protein contains ...    26   9.3  
At1g63150.1 68414.m07137 pentatricopeptide (PPR) repeat-containi...    26   9.3  
At1g62910.1 68414.m07103 pentatricopeptide (PPR) repeat-containi...    26   9.3  

>At1g78770.1 68414.m09180 cell division cycle family protein similar
           to cell division cycle protein GI:603230 from [Homo
           sapiens]; contains Pfam profile PF00515 TPR Domain
           148977 (apparently not full-length).
          Length = 543

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +2

Query: 200 IGCFFNCIFRFALQRKYFSE 259
           +GC++ CI ++A  R+YFS+
Sbjct: 315 VGCYYYCIKKYAEARRYFSK 334


>At1g35710.1 68414.m04439 leucine-rich repeat transmembrane protein
           kinase, putative similar to many predicted protein
           kinases
          Length = 1120

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
 Frame = +3

Query: 111 ADARASRLKISNN---GRHTPCRQI*RPQLSDILVVF-LIAYLGLLYKENISLNTI*IYF 278
           ADA    + + +N    R  PCR++ +P+ +  LVV+ L+  LG+L   +I  NT   Y 
Sbjct: 752 ADALEENIGLCSNIPKQRLKPCRELKKPKKNGNLVVWILVPILGVLVILSICANTF-TYC 810

Query: 279 YKRYVLRN 302
            ++  L+N
Sbjct: 811 IRKRKLQN 818


>At4g17950.1 68417.m02673 DNA-binding family protein contains Pfam
           PF03479: Domain of unknown function (DUF296); contains
           Pfam PF02178: AT hook motif;
          Length = 439

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 130 LDARASANHSNQHRILPQQTGQQQHRPAKQMY 35
           L  R++ N+SN H I    T Q  H+   QMY
Sbjct: 398 LHRRSNNNNSNNHGIFGNSTPQPLHQIPMQMY 429


>At5g50440.1 68418.m06246 Golgi SNARE protein membrin 12 (MEMB12)
           identical to Membrin 12 (AtMEMB12) (Golgi SNAP receptor
           complex member 2-2) (GI:27805575)(SP:Q9FK28)
           {Arabidopsis thaliana}; similar to Probable 27 kDa Golgi
           SNARE protein (Golgi SNAP receptor complex member 2)
           (SP:Q9SJL6) [Arabidopsis thaliana]
          Length = 219

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +2

Query: 305 LLSKVQE*RKKVHAARRLALDFVETLSLIN 394
           +LSK  E R ++ +A+R ALD + T+ L N
Sbjct: 154 ILSKYAEQRDRLKSAQRKALDVLNTVGLSN 183


>At2g36900.1 68415.m04526 Golgi SNARE protein membrin 11 (MEMB11) / 
           Golgi SNAP receptor complex member 2-1 identical to
           SP:Q9SJL6; identical to Probable 27 kDa Golgi SNARE
           protein (Golgi SNAP receptor complex member 2)
           (SP:Q9SJL6) [Arabidopsis thaliana]
          Length = 225

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +2

Query: 305 LLSKVQE*RKKVHAARRLALDFVETLSLIN 394
           +LSK  E R ++ +A+R ALD + T+ L N
Sbjct: 160 ILSKYAEQRDRLKSAQRKALDVLNTVGLSN 189


>At5g61160.1 68418.m07673 transferase family protein similar to
           anthocyanin 5-aromatic acyltransferase from Gentiana
           triflora GI:4185599, malonyl CoA:anthocyanin
           5-O-glucoside-6'''-O-malonyltransferase from Perilla
           frutescens GI:17980232, Salvia splendens GI:17980234;
           contains Pfam profile PF02458 transferase family
          Length = 452

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 338 LSFFTLGL*KANIPQNISFIKINSDSIQRNIFF 240
           LSFF L   K N  + + F K+   S  R++F+
Sbjct: 25  LSFFDLQWLKLNPTEQVFFYKLTESSSSRDVFY 57


>At4g03175.1 68417.m00434 protein kinase family protein contains
           similarity to Swiss-Prot:P51566 protein kinase AFC1
           [Arabidopsis thaliana]
          Length = 139

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +2

Query: 245 KYFSEYYLNLFL*TICSE-EYLLSKVQE*RKKVHAARRLALDFVETLSLIN 394
           KYF++ Y    L    +E EY++++     +++  +  L LDFV TL  IN
Sbjct: 67  KYFTKEYDLYHLNEESNEIEYIITEESSLEEQLQVSDELFLDFVRTLLEIN 117


>At2g40120.1 68415.m04934 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 570

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +2

Query: 245 KYFSEYYLNLFL*TICSE-EYLLSKVQE*RKKVHAARRLALDFVETLSLIN 394
           KYF++ Y    L    +E EY++++     +++  +  L LDFV TL  IN
Sbjct: 497 KYFTKEYDLYHLNEESNEIEYIITEESSLEEQLQVSDELFLDFVRTLLDIN 547


>At1g63150.1 68414.m07137 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 629

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = -3

Query: 108 ITAISTGYCHSKQASNSTGLPNKCI 34
           ++++  GYCHSK+ S++  L ++ +
Sbjct: 156 LSSLLNGYCHSKRISDAVALVDQMV 180


>At1g62910.1 68414.m07103 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 1133

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = -3

Query: 108 ITAISTGYCHSKQASNSTGLPNKCI 34
           ++++  GYCHSK+ S++  L ++ +
Sbjct: 156 LSSLLNGYCHSKRISDAVALVDQMV 180


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,644,961
Number of Sequences: 28952
Number of extensions: 161531
Number of successful extensions: 416
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)