Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_O20
(432 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces ... 105 4e-24
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 49 4e-07
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo... 36 0.003
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 36 0.003
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom... 31 0.057
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar... 31 0.057
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 28 0.53
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi... 27 1.6
SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr 1|... 26 2.2
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|... 26 2.2
SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|... 26 2.2
SPBC14C8.05c |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharo... 26 2.8
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 26 2.8
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 25 3.8
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 25 6.6
>SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 170
Score = 105 bits (251), Expect = 4e-24
Identities = 40/67 (59%), Positives = 52/67 (77%), Gaps = 1/67 (1%)
Frame = +2
Query: 233 TVVCKHWLRGLCKKGDQCEFLHEYDMSKMPECYFYARFNACHN-KECPFLHIDPESKIKD 409
+VVCKHWLRGLCKKG+QC+FLHEY++ KMP C+FYA C N +EC +LH+DP ++
Sbjct: 51 SVVCKHWLRGLCKKGEQCDFLHEYNLKKMPPCHFYAERGWCSNGEECLYLHLDPSKQVGV 110
Query: 410 CPWYDRG 430
C WY+ G
Sbjct: 111 CAWYNMG 117
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 48.8 bits (111), Expect = 4e-07
Identities = 20/80 (25%), Positives = 35/80 (43%)
Frame = +2
Query: 146 TAAVCEFFSXXXXXXXXXXXXYRHVRGDRTVVCKHWLRGLCKKGDQCEFLHEYDMSKMPE 325
+A C +++ + H R +C +L G C K + C HE D ++P
Sbjct: 205 SAVYCRYYNANGICGKGAACRFVH-EPTRKTICPKFLNGRCNKAEDCNLSHELDPRRIPA 263
Query: 326 CYFYARFNACHNKECPFLHI 385
C ++ C+N C ++HI
Sbjct: 264 CRYFL-LGKCNNPNCRYVHI 282
Score = 31.9 bits (69), Expect = 0.043
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +2
Query: 230 RTVVCKHWLRGLCKKGDQCEFLHEYDMSKMPECYFYARFNACH-NKECPFLHI 385
R C+++L G C + C ++H + P C+ +A++ C C HI
Sbjct: 260 RIPACRYFLLGKCNNPN-CRYVHIHYSENAPICFEFAKYGFCELGTSCKNQHI 311
>SPAC3A11.02 |cps3|mug188|zinc finger protein
Cps3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 35.9 bits (79), Expect = 0.003
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 236 VVCKHWLRGLCKKGDQCEFLHEYDM-SKMPECYFYARFNACHNKECPFLHIDPESK 400
V CK + +G C G C F H+ ++ ++ C ++ + N +C H+ P+ +
Sbjct: 39 VPCKFFRQGTCTSGKNCIFSHDLELATEKTICKYFQKGNCKFGSKCALEHVLPDGR 94
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 35.9 bits (79), Expect = 0.003
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +2
Query: 218 VRGDRTVVCKHWLRGLCKKGDQCEFLHEYDMSKMPECYFYARFNACHNKECPFLHIDP 391
V+ + V CK + G C G+ C F H + ++ P C ++ + N +C H P
Sbjct: 39 VKNLQHVPCKFFRNGTCTAGENCPFSHSLE-TERPICKYFLKGNCKFGPKCALSHALP 95
>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 31.5 bits (68), Expect = 0.057
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +2
Query: 242 CKHWLRGLCKKGDQCEFLH 298
C ++ RG+C +G +CE+LH
Sbjct: 117 CLYFARGMCSEGSKCEYLH 135
>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 404
Score = 31.5 bits (68), Expect = 0.057
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 11/62 (17%)
Frame = +2
Query: 230 RTVVCKHW-LRGLCKKGDQCEFLHEYDMSKMP---------ECYFYARFNAC-HNKECPF 376
+T CK+W + G C+ G +C+F H K P C + + C + C F
Sbjct: 328 KTEPCKNWQISGTCRYGSKCQFAHGNQELKEPPRHPKYKSERCRSFMMYGYCPYGLRCCF 387
Query: 377 LH 382
LH
Sbjct: 388 LH 389
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 28.3 bits (60), Expect = 0.53
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = +2
Query: 239 VCKHW-LRGLCKKGDQCEFLH 298
VCK + L G C GD C+FLH
Sbjct: 189 VCKDYKLTGYCGYGDTCKFLH 209
>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 26.6 bits (56), Expect = 1.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 218 VRGDRTVVCKHWLRGLCKKGDQCEFLHEYDMSKMPE 325
+R T +C+H +G+C D C L YD S E
Sbjct: 134 IRRSMTSLCRHGPKGMC---DYCSPLEPYDESYRQE 166
>SPAC25H1.02 |jmj1||Jmj1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 464
Score = 26.2 bits (55), Expect = 2.2
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +2
Query: 17 YSDQIINMEVIVASVDHIKFDIDFA-LEEQYGALPLP 124
Y+++I+N E +D + ++ LEE YG +P+P
Sbjct: 98 YAERIVNNEDKNVFLDSLLLSPNYEYLEENYGTIPVP 134
>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 456
Score = 26.2 bits (55), Expect = 2.2
Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 245 KHW-LRGLCKKGDQCEFLHEYDMSKMPECY 331
++W +R +G CE +HE D++ +P Y
Sbjct: 347 EYWTVRAEAAEGYDCEKIHEIDVADIPSLY 376
>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 381
Score = 26.2 bits (55), Expect = 2.2
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +2
Query: 287 EFLHEYDMSKMPECYFYARFNACHNKECPFLHI 385
+F H+YD MP+ + A+ N + LH+
Sbjct: 92 KFTHKYDNQDMPDSVWLAKVNGMTKSDPIILHL 124
>SPBC14C8.05c
|meu17||glucan-alpha-1,4-glucosidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 450
Score = 25.8 bits (54), Expect = 2.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -2
Query: 296 GGIHTDLLSCTTLLANVYTRLYDHH 222
G + L C+TLLA++Y+ +D H
Sbjct: 269 GRVDRSGLDCSTLLASLYSNEFDMH 293
>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1107
Score = 25.8 bits (54), Expect = 2.8
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = +3
Query: 99 NNMEHYHYLSLEWTNXXXXCVNSSVSLEVVAMALSVHTDMFVVIVQSCVNIG 254
NN H+HY+ L W + +N+ L + +L V ++ + ++ N G
Sbjct: 126 NNTWHFHYIVLLWLS---QALNTPFPLNSLDDSLDVKKTIYTIAIKYLENSG 174
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 25.4 bits (53), Expect = 3.8
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -2
Query: 278 LLSC--TTLLANVYTRLYDHHEHVCMDTEGHCHNL 180
+LSC +L A VYT Y+H + + D CH L
Sbjct: 1750 ILSCLLVSLPAMVYT--YEHSDPITFDLSVFCHKL 1782
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 24.6 bits (51), Expect = 6.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 228 IVQSCVNIG*EGCARKEISVNSSMNMTCRKC 320
+ Q+C N+G E +N +MN+ CR C
Sbjct: 310 VCQNCGNVGHRRFDCPE-RINHTMNIVCRHC 339
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,840,444
Number of Sequences: 5004
Number of extensions: 36927
Number of successful extensions: 110
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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