Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_O20
         (432 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   2.6  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     22   2.6  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   3.4  
DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex det...    21   7.8  
DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex det...    21   7.8  
DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex det...    21   7.8  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    21   7.8  
DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex det...    21   7.8  
DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex det...    21   7.8  
DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex det...    21   7.8  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +2

Query: 344 FNACHNKECPFLHIDPE 394
           F   HN  C   H+DP+
Sbjct: 310 FTTRHNATCYLSHVDPD 326


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +2

Query: 344 FNACHNKECPFLHIDPE 394
           F   HN  C   H+DP+
Sbjct: 16  FTTRHNATCYLSHVDPD 32


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 326 IQAFSTCHIHGGIHTDLLSCTTLLAN 249
           +++   CH +G +H DL     LLA+
Sbjct: 19  LESVHHCHHNGVVHRDLKPENLLLAS 44


>DQ325121-1|ABD14135.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 6/20 (30%), Positives = 11/20 (55%)
 Frame = +1

Query: 25  SNYKYGSYRGQCGSHKIRYR 84
           +NYKY +Y     ++   Y+
Sbjct: 87  NNYKYSNYNNYNNNYNTNYK 106


>DQ325120-1|ABD14134.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 6/20 (30%), Positives = 11/20 (55%)
 Frame = +1

Query: 25  SNYKYGSYRGQCGSHKIRYR 84
           +NYKY +Y     ++   Y+
Sbjct: 87  NNYKYSNYNNYNNNYNTNYK 106


>DQ325119-1|ABD14133.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 6/20 (30%), Positives = 11/20 (55%)
 Frame = +1

Query: 25  SNYKYGSYRGQCGSHKIRYR 84
           +NYKY +Y     ++   Y+
Sbjct: 87  NNYKYSNYNNYNNNYNTNYK 106


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 6/20 (30%), Positives = 11/20 (55%)
 Frame = +1

Query: 25  SNYKYGSYRGQCGSHKIRYR 84
           +NYKY +Y     ++   Y+
Sbjct: 87  NNYKYSNYNNYNNNYNTNYK 106


>DQ325117-1|ABD14131.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 6/20 (30%), Positives = 11/20 (55%)
 Frame = +1

Query: 25  SNYKYGSYRGQCGSHKIRYR 84
           +NYKY +Y     ++   Y+
Sbjct: 87  NNYKYSNYNNYNNNYNTNYK 106


>DQ325116-1|ABD14130.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 6/20 (30%), Positives = 11/20 (55%)
 Frame = +1

Query: 25  SNYKYGSYRGQCGSHKIRYR 84
           +NYKY +Y     ++   Y+
Sbjct: 87  NNYKYSNYNNYNNNYNTNYK 106


>DQ325114-1|ABD14128.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 6/20 (30%), Positives = 11/20 (55%)
 Frame = +1

Query: 25  SNYKYGSYRGQCGSHKIRYR 84
           +NYKY +Y     ++   Y+
Sbjct: 87  NNYKYSNYNNYNNNYNTNYK 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,448
Number of Sequences: 438
Number of extensions: 2506
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)