Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_O20
(432 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g30460.1 68414.m03723 zinc finger (CCCH-type) family protein ... 80 7e-16
At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein ... 46 1e-05
At1g21570.1 68414.m02697 zinc finger (CCCH-type) family protein ... 46 1e-05
At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family... 45 2e-05
At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4 pro... 43 8e-05
At3g08505.2 68416.m00987 zinc finger (CCCH-type/C3HC4-type RING ... 41 3e-04
At3g08505.1 68416.m00986 zinc finger (CCCH-type/C3HC4-type RING ... 41 3e-04
At2g02160.1 68415.m00152 zinc finger (CCCH-type) family protein ... 39 0.001
At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3 pro... 37 0.007
At5g63260.1 68418.m07940 zinc finger (CCCH-type) family protein ... 34 0.036
At5g07500.1 68418.m00858 zinc finger (CCCH-type) family protein ... 33 0.063
At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1 pro... 33 0.083
At3g55980.1 68416.m06220 zinc finger (CCCH-type) family protein ... 33 0.083
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 33 0.083
At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein ... 33 0.11
At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2 pro... 32 0.15
At5g12850.1 68418.m01475 zinc finger (CCCH-type) family protein ... 32 0.15
At1g32975.1 68414.m04061 hypothetical protein 32 0.15
At2g40140.1 68415.m04937 zinc finger (CCCH-type) family protein ... 32 0.19
At2g25900.1 68415.m03108 zinc finger (CCCH-type) family protein ... 32 0.19
At4g29190.1 68417.m04176 zinc finger (CCCH-type) family protein ... 31 0.25
At3g48440.1 68416.m05288 zinc finger (CCCH-type) family protein ... 31 0.34
At2g19810.1 68415.m02316 zinc finger (CCCH-type) family protein ... 31 0.34
At1g75340.1 68414.m08751 zinc finger (CCCH-type) family protein ... 31 0.34
At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein ... 31 0.44
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 31 0.44
At2g41900.1 68415.m05183 zinc finger (CCCH-type) family protein ... 31 0.44
At2g20280.1 68415.m02369 zinc finger (CCCH-type) family protein ... 31 0.44
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 30 0.59
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 30 0.78
At5g06770.1 68418.m00765 KH domain-containing protein / zinc fin... 29 1.4
At3g12130.1 68416.m01509 KH domain-containing protein / zinc fin... 29 1.4
At5g58620.1 68418.m07346 zinc finger (CCCH-type) family protein ... 29 1.8
At5g16540.2 68418.m01935 zinc finger (CCCH-type) family protein ... 29 1.8
At5g56900.2 68418.m07101 CwfJ-like family protein / zinc finger ... 28 2.4
At5g56900.1 68418.m07100 CwfJ-like family protein / zinc finger ... 28 2.4
At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein ... 28 2.4
At3g19360.1 68416.m02456 zinc finger (CCCH-type) family protein ... 28 2.4
At1g66810.1 68414.m07594 zinc finger (CCCH-type) family protein ... 28 2.4
At5g16540.3 68418.m01936 zinc finger (CCCH-type) family protein ... 28 3.1
At5g16540.1 68418.m01934 zinc finger (CCCH-type) family protein ... 28 3.1
At2g05160.1 68415.m00543 zinc finger (CCCH-type) family protein ... 28 3.1
At1g68200.1 68414.m07791 zinc finger (CCCH-type) family protein ... 28 3.1
At5g55930.1 68418.m06976 oligopeptide transporter OPT family pro... 27 4.1
At1g68100.1 68414.m07779 IAA-alanine resistance protein 1, putat... 27 4.1
At5g14720.1 68418.m01727 protein kinase family protein contains ... 27 5.5
At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING ... 27 5.5
At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING ... 27 5.5
At1g03790.1 68414.m00360 zinc finger (CCCH-type) family protein ... 27 5.5
At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING ... 27 5.5
At2g33835.1 68415.m04152 zinc finger (CCCH-type) family protein ... 27 7.2
At1g48195.1 68414.m05380 zinc finger (CCCH-type) family protein ... 27 7.2
At4g13840.1 68417.m02144 transferase family protein low similari... 26 9.6
At3g61480.1 68416.m06885 expressed protein 26 9.6
At3g56400.1 68416.m06272 WRKY family transcription factor DNA-bi... 26 9.6
At3g02830.1 68416.m00275 zinc finger (CCCH-type) family protein ... 26 9.6
At1g34500.1 68414.m04288 membrane bound O-acyl transferase (MBOA... 26 9.6
>At1g30460.1 68414.m03723 zinc finger (CCCH-type) family protein /
YT521-B-like family protein low similarity to cleavage
and polyadenylation specificity factor 30 kDa subunit
[Bos taurus] GI:2327052; contains Pfam profiles PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar),
PF04146: YT521-B-like family; supporting cDNA
gi|24415581|gb|AY140901.1|
Length = 678
Score = 79.8 bits (188), Expect = 7e-16
Identities = 31/70 (44%), Positives = 44/70 (62%)
Frame = +2
Query: 221 RGDRTVVCKHWLRGLCKKGDQCEFLHEYDMSKMPECYFYARFNACHNKECPFLHIDPESK 400
R R VC+HWLRGLC KGD C FLH++D ++MP C F+ + C ++C + H + +
Sbjct: 59 RSFRQTVCRHWLRGLCMKGDACGFLHQFDKARMPICRFFRLYGECREQDCVYKHTNED-- 116
Query: 401 IKDCPWYDRG 430
IK+C Y G
Sbjct: 117 IKECNMYKLG 126
Score = 26.2 bits (55), Expect = 9.6
Identities = 14/54 (25%), Positives = 19/54 (35%)
Frame = +2
Query: 137 DKSTAAVCEFFSXXXXXXXXXXXXYRHVRGDRTVVCKHWLRGLCKKGDQCEFLH 298
DK+ +C FF Y+H D C + G C G C + H
Sbjct: 87 DKARMPICRFFRLYGECREQDCV-YKHTNED-IKECNMYKLGFCPNGPDCRYRH 138
>At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 675
Score = 46.0 bits (104), Expect = 1e-05
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +2
Query: 242 CKHWLRGLCKKGDQCEFLHE-YDMSKMPECYFYARFNACHNKECPFLH 382
C+H+L+G C +GD+C+F H+ +K C ++A + +CPF H
Sbjct: 356 CRHYLKGRCHEGDKCKFSHDTIPETKCSPCCYFATQSCMKGDDCPFDH 403
Score = 31.5 bits (68), Expect = 0.25
Identities = 17/58 (29%), Positives = 23/58 (39%)
Frame = +2
Query: 242 CKHWLRGLCKKGDQCEFLHEYDMSKMPECYFYARFNACHNKECPFLHIDPESKIKDCP 415
C ++ C KGD C F ++D+SK P F + C F H D P
Sbjct: 385 CCYFATQSCMKGDDCPF--DHDLSKYPCNNFITKGFCYRGDSCLFSHKGTPQSASDTP 440
>At1g21570.1 68414.m02697 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 470
Score = 46.0 bits (104), Expect = 1e-05
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Frame = +2
Query: 230 RTVVCKHWLRGLCKKGDQCEFLHEYDMSKMPECYFYARFNACHNKECPF--LHIDPESKI 403
+ VC +L GLC + C+ H+ +MP+C +Y + C+N+ CP+ +H++P + I
Sbjct: 270 KIAVCTKFLNGLCANAN-CKLTHKVIPERMPDCSYYLQ-GLCNNEACPYRHVHVNPIAPI 327
Query: 404 KD 409
D
Sbjct: 328 CD 329
Score = 33.5 bits (73), Expect = 0.063
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +2
Query: 242 CKHWLR-GLCKKGD-QCEFLHEYDMSKMPECYFYARFNACHNKECPFLHIDPESKIKDCP 415
C+ + R G C K D +C ++H D SK+ C + C N C H ++ DC
Sbjct: 246 CQFFTRFGKCNKDDGKCPYVH--DPSKIAVCTKFLN-GLCANANCKLTHKVIPERMPDCS 302
Query: 416 WYDRG 430
+Y +G
Sbjct: 303 YYLQG 307
Score = 33.5 bits (73), Expect = 0.063
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 209 YRHVRGDRTV-VCKHWLRGLCKKGDQCEFLHEYD 307
YRHV + +C +L+G C +GD+C H Y+
Sbjct: 316 YRHVHVNPIAPICDGFLKGYCSEGDECRKKHSYN 349
Score = 29.9 bits (64), Expect = 0.78
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +2
Query: 314 KMPECYFYARFNACHNKE--CPFLHIDPESKIKDCPWYDRG 430
K C F+ RF C+ + CP++H DP SKI C + G
Sbjct: 242 KKKYCQFFTRFGKCNKDDGKCPYVH-DP-SKIAVCTKFLNG 280
>At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family
protein similar to SP|Q28141 ATP-dependent RNA helicase
A (Nuclear DNA helicase II) (DEAD-box protein 9) {Bos
taurus}; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 1015
Score = 45.2 bits (102), Expect = 2e-05
Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +2
Query: 239 VCKHWLRGLCKKGDQCEFLHEYDMSKMPECYFYARFNACHNKE-CPFLH 382
VC ++L G C +G QC F H S P C F+A C N E C F H
Sbjct: 732 VCVYFLNGYCNRGGQCTFTHTL-QSTRPACKFFASSQGCRNGESCLFSH 779
>At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4
protein (ZFWD4) contains 6 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd4 protein (GI:12057170)
[Arabidopsis thaliana]
Length = 419
Score = 43.2 bits (97), Expect = 8e-05
Identities = 21/46 (45%), Positives = 26/46 (56%)
Frame = +2
Query: 230 RTVVCKHWLRGLCKKGDQCEFLHEYDMSKMPECYFYARFNACHNKE 367
R VCK+W G CK+G+QC+FLH + S P A HNKE
Sbjct: 91 RKWVCKYWKDGKCKRGEQCQFLHSW--SCFPGLAMVASLEG-HNKE 133
>At3g08505.2 68416.m00987 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains zinc finger
C-x8-C-x5-C-x3-H type (and similar) domains,
Pfam:PF00642 and zinc finger, C3HC4 type (RING finger)
domain, Pfam:PF00097
Length = 323
Score = 41.1 bits (92), Expect = 3e-04
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +2
Query: 236 VVCKHWLRGLCKKGDQCEFLHEYDMSKMPECYFYARFNACHNKECPFLHIDPESKI 403
++CK ++ G C KG+ CEF H+ C FY + + C + H+ S +
Sbjct: 5 ILCKFFVHGSCLKGENCEFSHDSKDPPNNVCTFYQKRICLYGSRCRYDHVRAASNL 60
>At3g08505.1 68416.m00986 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains zinc finger
C-x8-C-x5-C-x3-H type (and similar) domains,
Pfam:PF00642 and zinc finger, C3HC4 type (RING finger)
domain, Pfam:PF00097
Length = 323
Score = 41.1 bits (92), Expect = 3e-04
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +2
Query: 236 VVCKHWLRGLCKKGDQCEFLHEYDMSKMPECYFYARFNACHNKECPFLHIDPESKI 403
++CK ++ G C KG+ CEF H+ C FY + + C + H+ S +
Sbjct: 5 ILCKFFVHGSCLKGENCEFSHDSKDPPNNVCTFYQKRICLYGSRCRYDHVRAASNL 60
>At2g02160.1 68415.m00152 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 669
Score = 39.1 bits (87), Expect = 0.001
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 266 CKKGDQCEFLH-EYDMSKMPECYFYARFNACHNKECPFLH 382
CKKG +CE+ H EY +CY++ N C N +C F H
Sbjct: 45 CKKGPECEYRHSEYARMNPRDCYYWLNGN-CLNPKCGFRH 83
Score = 31.9 bits (69), Expect = 0.19
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 236 VVCKHWLRGLCKKGDQCEFLH 298
V C + +G+C KGD C FLH
Sbjct: 118 VPCLFFQKGMCMKGDMCSFLH 138
>At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3
protein (ZFWD3) contains 5 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd3 protein (GP:12057168)
{Arabidopsis thaliana}
Length = 472
Score = 36.7 bits (81), Expect = 0.007
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 239 VCKHWLRGLCKKGDQCEFLHEY 304
VC W G CKKG++C+FLH +
Sbjct: 150 VCNFWKDGNCKKGEKCQFLHSW 171
>At5g63260.1 68418.m07940 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 435
Score = 34.3 bits (75), Expect = 0.036
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Frame = +2
Query: 218 VRGDRTVVCKHWLR-GLCKKGDQCEFLH--EYDM-SKMPECYFYARFNACHNKECPFLHI 385
V + + CK++ R G CK G+ C F H E++ + +PE F KECPF
Sbjct: 146 VENPKLMECKYYFRTGGCKYGESCRFSHMKEHNSPASVPELNFLGLPIRPGEKECPFYMR 205
Query: 386 DPESKI-KDC 412
+ K DC
Sbjct: 206 NGSCKFGSDC 215
>At5g07500.1 68418.m00858 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 245
Score = 33.5 bits (73), Expect = 0.063
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Frame = +2
Query: 236 VVCKHWLRGLCKKGDQCEFLH-EYDMSKMPECYFYARFNA---CHNKECPFLH 382
V C + G C +GD CEF H ++ P Y NA C K C F H
Sbjct: 96 VACPAFRNGACHRGDSCEFAHGVFEYWLHPARYRTRACNAGNLCQRKVCFFAH 148
>At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1
protein (ZFWD1) identical to zfwd1 protein (GI:12057164)
[Arabidopsis thaliana]
Length = 430
Score = 33.1 bits (72), Expect = 0.083
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 5/30 (16%)
Frame = +2
Query: 224 GDRTV-----VCKHWLRGLCKKGDQCEFLH 298
G+RTV +CK W+ G C GD+C +LH
Sbjct: 97 GNRTVTKTEKLCKFWVDGNCPYGDKCRYLH 126
>At3g55980.1 68416.m06220 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 580
Score = 33.1 bits (72), Expect = 0.083
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Frame = +2
Query: 236 VVCKHWLRGLCKKGDQCEFLHEYDMSKMPECYFYARF----NACHNKECPFLH 382
V C + +G C KGD CE+ H S + + R C K C F H
Sbjct: 255 VPCPEFRKGSCPKGDSCEYAHGVFESWLHPAQYKTRLCKDETGCARKVCFFAH 307
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 33.1 bits (72), Expect = 0.083
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +2
Query: 215 HVRGDRTVVCKHWLRGLCKKGDQCEFLHE 301
+ + +R +C ++RG C +GD+C + HE
Sbjct: 154 YYKRNRAHICSFFIRGECTRGDECPYRHE 182
>At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 552
Score = 32.7 bits (71), Expect = 0.11
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 242 CKHWLRGLCKKGDQCEFLH 298
C ++ RGLCK G+ C+F+H
Sbjct: 135 CVYFSRGLCKNGESCKFIH 153
>At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2
protein (ZFWD2), putative 99.8% identical to zfwd2
protein (GI:12057166) [Arabidopsis thaliana]; contains 6
copies (2 weak) Pfam PF00400: WD domain, G-beta repeat;
contains Pfam PF00642: Zinc finger C-x8-C-x5-C-x3-H type
(and similar) domain
Length = 437
Score = 32.3 bits (70), Expect = 0.15
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 5/30 (16%)
Frame = +2
Query: 224 GDRTV-----VCKHWLRGLCKKGDQCEFLH 298
G+RTV VC W+ G C GD+C +LH
Sbjct: 104 GNRTVTKTEKVCNFWVDGNCTYGDKCRYLH 133
>At5g12850.1 68418.m01475 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 706
Score = 32.3 bits (70), Expect = 0.15
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Frame = +2
Query: 236 VVCKHWLRGLCKKGDQCEFLHEYDMSKMPECYFYARF----NACHNKECPFLHIDPE 394
V C + +G CK+GD CE+ H + + R C+ + C F H + E
Sbjct: 301 VPCPDFKKGSCKQGDMCEYAHGVFECWLHPAQYRTRLCKDGMGCNRRVCFFAHANEE 357
>At1g32975.1 68414.m04061 hypothetical protein
Length = 120
Score = 32.3 bits (70), Expect = 0.15
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 257 RGLCKKGDQCEFLHEYDMSKMPE 325
RG+C KGD C+F H Y + + E
Sbjct: 40 RGVCLKGDSCDFNHSYTLPRREE 62
>At2g40140.1 68415.m04937 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 597
Score = 31.9 bits (69), Expect = 0.19
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Frame = +2
Query: 236 VVCKHWLRGLCKKGDQCEFLHEYDMSKMPECYFYARF----NACHNKECPFLH 382
V C + +G C KGD CE+ H S + + R C + C F H
Sbjct: 258 VPCPEFRKGSCPKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCARRVCFFAH 310
>At2g25900.1 68415.m03108 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 315
Score = 31.9 bits (69), Expect = 0.19
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Frame = +2
Query: 242 CKHWLRGLCKKGDQCEFLH-EYDMSKMPECYFYARF---NACHNKECPFLHIDPESKIKD 409
C + +G C++GD CEF H ++ P Y +C + C F H + ++
Sbjct: 136 CPEFRKGSCRRGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRRICFFAHTTEQLRVLP 195
Query: 410 C 412
C
Sbjct: 196 C 196
>At4g29190.1 68417.m04176 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 356
Score = 31.5 bits (68), Expect = 0.25
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 242 CKHWLRGLCKKGDQCEFLH 298
C + +G CKKGD CEF H
Sbjct: 125 CPDFRKGGCKKGDSCEFAH 143
>At3g48440.1 68416.m05288 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 448
Score = 31.1 bits (67), Expect = 0.34
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 19/69 (27%)
Frame = +2
Query: 242 CKHWLR-GLCKKGDQCEFLH-----------EYDMSKMP------ECYFYARFNAC-HNK 364
CK++ R G CK G+ C F H E + +P EC +Y R +C +
Sbjct: 164 CKYYFRTGGCKYGETCRFNHTIPKSGLASAPELNFLGLPLRPGEVECPYYMRNGSCKYGA 223
Query: 365 ECPFLHIDP 391
EC F H DP
Sbjct: 224 ECKFNHPDP 232
>At2g19810.1 68415.m02316 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 359
Score = 31.1 bits (67), Expect = 0.34
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 242 CKHWLRGLCKKGDQCEFLH 298
C + +G CK+GD CEF H
Sbjct: 124 CPEFRKGCCKRGDACEFSH 142
>At1g75340.1 68414.m08751 zinc finger (CCCH-type) family protein
weak similarity to Nucleoporin NUP42 (Nuclear pore
protein NUP42) (Swiss-Prot:P49686) [Saccharomyces
cerevisiae]; contains Pfam profile PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 435
Score = 31.1 bits (67), Expect = 0.34
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 230 RTVVCKHWLRGLCKKGDQCEFLH 298
R +C+++ RG C+ G+ C FLH
Sbjct: 2 RKELCRNFQRGSCRYGENCRFLH 24
>At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM), PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 540
Score = 30.7 bits (66), Expect = 0.44
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 236 VVCKHWLRGLCKKGDQCEFLH 298
V C ++ RG CK G C F+H
Sbjct: 152 VPCSYFARGFCKNGASCRFVH 172
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 30.7 bits (66), Expect = 0.44
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 239 VCKHWLRGLCKKGDQCEFLHE 301
VC+ + RG C +GD C+F H+
Sbjct: 135 VCRAFQRGECTRGDSCKFSHD 155
Score = 30.7 bits (66), Expect = 0.44
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +2
Query: 239 VCKHWLRGLCKKGDQCEFLHE 301
VC+ + RG C +GD C+F H+
Sbjct: 185 VCRAFQRGECTRGDSCKFSHD 205
>At2g41900.1 68415.m05183 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 716
Score = 30.7 bits (66), Expect = 0.44
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Frame = +2
Query: 236 VVCKHWLRGLCKKGDQCEFLHEYDMSKMPECYFYARF----NACHNKECPFLHIDPE 394
V C + +G C++GD CE+ H + + R C + C F H E
Sbjct: 305 VPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTGCARRVCFFAHTPEE 361
>At2g20280.1 68415.m02369 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 371
Score = 30.7 bits (66), Expect = 0.44
Identities = 9/32 (28%), Positives = 22/32 (68%)
Frame = +2
Query: 230 RTVVCKHWLRGLCKKGDQCEFLHEYDMSKMPE 325
++++C+ + G C+KG +C+F H+ ++ + E
Sbjct: 90 KSILCEFFKAGQCQKGFKCKFSHDLNIQRKGE 121
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 30.3 bits (65), Expect = 0.59
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +2
Query: 215 HVRGDRTVVCKHWLRGLCKKGDQCEFLHE 301
+ + +R VC ++RG C +G +C + HE
Sbjct: 154 YYKRNRAHVCSFFIRGECTRGAECPYRHE 182
Score = 26.2 bits (55), Expect = 9.6
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = +2
Query: 302 YDMSKMPECYFYARFNACHNKECPFLHIDPES 397
Y ++ C F+ R ECP+ H PE+
Sbjct: 155 YKRNRAHVCSFFIRGECTRGAECPYRHEMPET 186
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 29.9 bits (64), Expect = 0.78
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 227 DRTVVCKHWLRGLCKKGDQCEFLHE 301
+R +C + G CK+G +C F HE
Sbjct: 155 NRPKICSFYTIGQCKRGAECSFRHE 179
>At5g06770.1 68418.m00765 KH domain-containing protein / zinc finger
(CCCH type) family protein contains Pfam domains
PF00013: KH domain and PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 240
Score = 29.1 bits (62), Expect = 1.4
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 230 RTVVCKHWLRGLCKKGDQCEFLH 298
+T +C + +G C GD+C F H
Sbjct: 207 KTKICDRYSKGNCTYGDRCHFAH 229
>At3g12130.1 68416.m01509 KH domain-containing protein / zinc finger
(CCCH type) family protein
Length = 248
Score = 29.1 bits (62), Expect = 1.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +2
Query: 230 RTVVCKHWLRGLCKKGDQCEFLH 298
+T +C+ + +G C GD+C F H
Sbjct: 215 KTKICERFSKGNCTFGDRCHFAH 237
>At5g58620.1 68418.m07346 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
PF00023: Ankyrin repeat
Length = 607
Score = 28.7 bits (61), Expect = 1.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +2
Query: 236 VVCKHWLRGLCKKGDQCEFLH 298
V C + +G C +GD CE+ H
Sbjct: 253 VPCPEFRKGSCSRGDTCEYAH 273
>At5g16540.2 68418.m01935 zinc finger (CCCH-type) family protein
identical to zinc finger protein 3 [Arabidopsis
thaliana] gi|4689376|gb|AAD27875; contains Pfam domain,
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Length = 368
Score = 28.7 bits (61), Expect = 1.8
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 12/59 (20%)
Frame = +2
Query: 242 CKHWLR-GLCKKGDQCEFLHEYDM----------SKMPECYFYARFNAC-HNKECPFLH 382
C+ +++ G CK G C+F H D S P C FY+R+ C C F H
Sbjct: 249 CQFYMKTGDCKFGTVCKFHHPRDRQTPPPDCVLSSGEPLCVFYSRYGICKFGPSCKFDH 307
Score = 27.9 bits (59), Expect = 3.1
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 18/65 (27%)
Frame = +2
Query: 242 CKHWLR-GLCKKGDQCEFLHEYDMSKM----------------PECYFYARFNAC-HNKE 367
C +++R GLC+ G C F H +D + PEC FY + C
Sbjct: 48 CAYYIRTGLCRFGSTCRFNHPHDRKLVIATARIKGEYPERIGQPECEFYLKTGTCKFGVT 107
Query: 368 CPFLH 382
C F H
Sbjct: 108 CKFHH 112
>At5g56900.2 68418.m07101 CwfJ-like family protein / zinc finger
(CCCH-type) family protein contains Pfam domain,
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and
similar), PF04677: Protein similar to CwfJ C-terminus 1,
PF04676: Protein similar to CwfJ C-terminus 2
Length = 593
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 254 LRGLCKKGDQCEFLHEYDMSKMPECYFYARFNACHNKECPFLHIDP 391
++G C+KG +C + HE+ + + NA +KEC F P
Sbjct: 343 IKGKCEKGPECSYKHEFQDESSIQRKPRSE-NANRSKECWFCLSSP 387
>At5g56900.1 68418.m07100 CwfJ-like family protein / zinc finger
(CCCH-type) family protein contains Pfam domain,
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and
similar), PF04677: Protein similar to CwfJ C-terminus 1,
PF04676: Protein similar to CwfJ C-terminus 2
Length = 404
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +2
Query: 254 LRGLCKKGDQCEFLHEYDMSKMPECYFYARFNACHNKECPFLHIDP 391
++G C+KG +C + HE+ + + NA +KEC F P
Sbjct: 154 IKGKCEKGPECSYKHEFQDESSIQRKPRSE-NANRSKECWFCLSSP 198
>At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 1230
Score = 28.3 bits (60), Expect = 2.4
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +2
Query: 239 VCKHWLRGLCKKGDQCEFLH 298
+CK + G CK+G C F H
Sbjct: 1210 ICKFYESGYCKRGASCSFWH 1229
>At3g19360.1 68416.m02456 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 386
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 230 RTVVCKHWLRGL-CKKGDQCEFLHEYDMSKMPE 325
R +C+ + G C GD+C F+HE D+SK E
Sbjct: 185 RMKLCRKFCFGEECPYGDRCNFIHE-DLSKFRE 216
Score = 27.1 bits (57), Expect = 5.5
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = +2
Query: 230 RTVVCKHWLRGLCKKGDQCEFLHEYDMSKMP 322
+T +C + G C+ G+ C F H + + P
Sbjct: 106 KTRMCAKFRAGTCRNGELCNFAHGIEDLRQP 136
>At1g66810.1 68414.m07594 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 310
Score = 28.3 bits (60), Expect = 2.4
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = +2
Query: 230 RTVVCKHWLR-GLCKKGDQCEFLHEYD 307
+T +C W G C GD C+F H D
Sbjct: 234 KTELCNKWQETGACCYGDNCQFAHGID 260
>At5g16540.3 68418.m01936 zinc finger (CCCH-type) family protein
identical to zinc finger protein 3 [Arabidopsis
thaliana] gi|4689376|gb|AAD27875; contains Pfam domain,
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Length = 354
Score = 27.9 bits (59), Expect = 3.1
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 18/65 (27%)
Frame = +2
Query: 242 CKHWLR-GLCKKGDQCEFLHEYDMSKM----------------PECYFYARFNAC-HNKE 367
C +++R GLC+ G C F H +D + PEC FY + C
Sbjct: 27 CAYYIRTGLCRFGSTCRFNHPHDRKLVIATARIKGEYPERIGQPECEFYLKTGTCKFGVT 86
Query: 368 CPFLH 382
C F H
Sbjct: 87 CKFHH 91
>At5g16540.1 68418.m01934 zinc finger (CCCH-type) family protein
identical to zinc finger protein 3 [Arabidopsis
thaliana] gi|4689376|gb|AAD27875; contains Pfam domain,
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Length = 375
Score = 27.9 bits (59), Expect = 3.1
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 18/65 (27%)
Frame = +2
Query: 242 CKHWLR-GLCKKGDQCEFLHEYDMSKM----------------PECYFYARFNAC-HNKE 367
C +++R GLC+ G C F H +D + PEC FY + C
Sbjct: 48 CAYYIRTGLCRFGSTCRFNHPHDRKLVIATARIKGEYPERIGQPECEFYLKTGTCKFGVT 107
Query: 368 CPFLH 382
C F H
Sbjct: 108 CKFHH 112
>At2g05160.1 68415.m00543 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 536
Score = 27.9 bits (59), Expect = 3.1
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = +2
Query: 239 VCKHWLRGLCKKGDQCEFLH 298
+C ++ +G CK G+ C + H
Sbjct: 161 ICHYFNKGFCKHGNNCRYFH 180
>At1g68200.1 68414.m07791 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 308
Score = 27.9 bits (59), Expect = 3.1
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Frame = +2
Query: 230 RTVVCKHWLR-GLCKKGDQCEFLH 298
+T +C W G C GD C+F H
Sbjct: 224 KTELCNKWQETGTCPYGDHCQFAH 247
>At5g55930.1 68418.m06976 oligopeptide transporter OPT family
protein similar to SP|P40900 Sexual differentiation
process protein isp4 {Schizosaccharomyces pombe},
oligopeptide transporter Opt1p [Candida albicans]
GI:2367386; contains Pfam profile PF03169: OPT
oligopeptide transporter protein
Length = 755
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 73 FYVIHTGHDNFHIYNLIRILNK 8
FY HT H YN+ RILN+
Sbjct: 332 FYTSHTFDQTGHTYNITRILNE 353
>At1g68100.1 68414.m07779 IAA-alanine resistance protein 1, putative
similar to IAA-alanine resistance protein 1 [Arabidopsis
thaliana] SWISS-PROT:Q9M647; contains ZIP Zinc
transporter domain, Pfam:PF02535; identical to cDNA
IAA-alanine resistance protein 1 mRNA GI:6942042
Length = 469
Score = 27.5 bits (58), Expect = 4.1
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -2
Query: 254 ANVYTRLYDHHEHVCMDTEGHCHNLQ 177
+N + +DHH+H D+ H H++Q
Sbjct: 174 SNDHHENHDHHDHSHSDSPSHSHSIQ 199
>At5g14720.1 68418.m01727 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 674
Score = 27.1 bits (57), Expect = 5.5
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = -2
Query: 335 RNNIQAFSTCHIHGGIHTDLLSCTTLL-ANVYTRLYDHHEHVCMDTEG 195
R ++A H HG IH D+ + LL +N +L D CM G
Sbjct: 121 RETLKALVYLHAHGHIHRDVKAGNILLDSNGAVKLADFGVSACMFDTG 168
>At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains Pfam domains PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar) and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 378
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = +2
Query: 239 VCKHWLR-GLCKKGDQCEFLHE 301
+CK + G C GD C+FLH+
Sbjct: 240 ICKDYKETGYCGYGDSCKFLHD 261
>At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains Pfam domains PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar) and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 378
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = +2
Query: 239 VCKHWLR-GLCKKGDQCEFLHE 301
+CK + G C GD C+FLH+
Sbjct: 240 ICKDYKETGYCGYGDSCKFLHD 261
>At1g03790.1 68414.m00360 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 393
Score = 27.1 bits (57), Expect = 5.5
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Frame = +2
Query: 239 VCKHWLRGL-CKKGDQCEFLH 298
VC + RG C +GD CEF H
Sbjct: 127 VCPEFRRGGDCSRGDDCEFAH 147
>At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein similar to SP|O15541 Zinc finger
protein 183 {Homo sapiens}; contains Pfam profiles
PF04396: Protein of unknown function, DUF537, PF00097:
Zinc finger, C3HC4 type (RING finger), PF00642: Zinc
finger C-x8-C-x5-C-x3-H type (and similar)
Length = 586
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = +2
Query: 239 VCKHWLR-GLCKKGDQCEFLHE 301
+CK + G C GD C+FLH+
Sbjct: 205 ICKDYKETGYCGYGDSCKFLHD 226
>At2g33835.1 68415.m04152 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 587
Score = 26.6 bits (56), Expect = 7.2
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 242 CKHWLRGLCKKGDQCEFLH 298
CK + +G C G C+FLH
Sbjct: 102 CKFFAKGWCFNGVSCKFLH 120
>At1g48195.1 68414.m05380 zinc finger (CCCH-type) family protein
contains Pfam profile PF00642: Zinc finger
C-x8-C-x5-C-x3-H type
Length = 82
Score = 26.6 bits (56), Expect = 7.2
Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = +2
Query: 239 VCKHWLR-GLCKKGDQCEFLH 298
+C H+ R G+C+ G C+F H
Sbjct: 60 ICPHYSRFGICRSGPTCKFDH 80
>At4g13840.1 68417.m02144 transferase family protein low similarity
to acetyl-CoA:benzylalcohol acetyltranferase [Clarkia
concinna] GI:6166328; contains Pfam profile PF02458:
Transferase family
Length = 428
Score = 26.2 bits (55), Expect = 9.6
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = -3
Query: 412 TILNLALWIYMKKGAFLIVTSIEASIEITFRHFRHVIFM 296
T L+LA+ ++ K A++ S E + ++T RH + +FM
Sbjct: 37 TGLDLAMKLHYLKAAYIY--SAETARDLTVRHLKEAMFM 73
>At3g61480.1 68416.m06885 expressed protein
Length = 1091
Score = 26.2 bits (55), Expect = 9.6
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 47 IVASVDHIKFDIDFALEEQYGALPL 121
+VA V +FDIDF E+YG L
Sbjct: 961 LVAFVKGTQFDIDFLQRERYGCAQL 985
>At3g56400.1 68416.m06272 WRKY family transcription factor
DNA-binding protein 4 WRKY4 - Nicotiana tabacum,
EMBL:AF193771
Length = 294
Score = 26.2 bits (55), Expect = 9.6
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -2
Query: 272 SCTTLLANVYTRLYDHHEHVCMDTEGH 192
+C T ++ DHH+ + MD+E H
Sbjct: 178 TCNTNAETPKSKTCDHHDEIFMDSEDH 204
>At3g02830.1 68416.m00275 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 397
Score = 26.2 bits (55), Expect = 9.6
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +2
Query: 242 CKHWLR-GLCKKGDQCEFLHEYD 307
C +++R GLC+ G C F H D
Sbjct: 46 CSYYIRTGLCRFGSTCRFNHPRD 68
>At1g34500.1 68414.m04288 membrane bound O-acyl transferase (MBOAT)
family protein / wax synthase-related similar to wax
synthase [Simmondsia chinensis] GI:5020219; contains
Pfam profile PF03062: MBOAT family
Length = 341
Score = 26.2 bits (55), Expect = 9.6
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +1
Query: 67 HKIRYRFCFRRT-IWSITTTFPWNGQINSSSV*ILQSAWRLWQWP 198
H++ Y + R T W +T F NG + V + ++A+ WP
Sbjct: 244 HELVYFYITRETPTWEVTLFFVLNGVCTGTEVAVKRTAFLQRWWP 288
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,565,790
Number of Sequences: 28952
Number of extensions: 192715
Number of successful extensions: 695
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 685039728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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