Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_O19
(367 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 31 0.074
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 29 0.23
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa... 26 2.1
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 24 6.4
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 30.7 bits (66), Expect = 0.074
Identities = 15/62 (24%), Positives = 23/62 (37%)
Frame = +2
Query: 104 NPDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDY 283
+P Y+P +P Y+P +P Y+P +P Y P +P Y
Sbjct: 1596 SPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1655
Query: 284 XP 289
P
Sbjct: 1656 SP 1657
Score = 30.7 bits (66), Expect = 0.074
Identities = 15/62 (24%), Positives = 23/62 (37%)
Frame = +2
Query: 104 NPDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDY 283
+P Y+P +P Y+P +P Y+P +P Y P +P Y
Sbjct: 1610 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1669
Query: 284 XP 289
P
Sbjct: 1670 SP 1671
Score = 30.7 bits (66), Expect = 0.074
Identities = 15/62 (24%), Positives = 23/62 (37%)
Frame = +2
Query: 104 NPDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDY 283
+P Y+P +P Y+P +P Y+P +P Y P +P Y
Sbjct: 1617 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1676
Query: 284 XP 289
P
Sbjct: 1677 SP 1678
Score = 30.7 bits (66), Expect = 0.074
Identities = 15/62 (24%), Positives = 23/62 (37%)
Frame = +2
Query: 104 NPDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDY 283
+P Y+P +P Y+P +P Y+P +P Y P +P Y
Sbjct: 1624 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1683
Query: 284 XP 289
P
Sbjct: 1684 SP 1685
Score = 30.7 bits (66), Expect = 0.074
Identities = 15/62 (24%), Positives = 23/62 (37%)
Frame = +2
Query: 104 NPDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDY 283
+P Y+P +P Y+P +P Y+P +P Y P +P Y
Sbjct: 1631 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1690
Query: 284 XP 289
P
Sbjct: 1691 SP 1692
Score = 30.7 bits (66), Expect = 0.074
Identities = 15/62 (24%), Positives = 23/62 (37%)
Frame = +2
Query: 104 NPDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDY 283
+P Y+P +P Y+P +P Y+P +P Y P +P Y
Sbjct: 1638 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1697
Query: 284 XP 289
P
Sbjct: 1698 SP 1699
Score = 30.7 bits (66), Expect = 0.074
Identities = 15/62 (24%), Positives = 23/62 (37%)
Frame = +2
Query: 104 NPDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDY 283
+P Y+P +P Y+P +P Y+P +P Y P +P Y
Sbjct: 1645 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1704
Query: 284 XP 289
P
Sbjct: 1705 SP 1706
Score = 30.7 bits (66), Expect = 0.074
Identities = 15/62 (24%), Positives = 23/62 (37%)
Frame = +2
Query: 104 NPDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDY 283
+P Y+P +P Y+P +P Y+P +P Y P +P Y
Sbjct: 1652 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1711
Query: 284 XP 289
P
Sbjct: 1712 SP 1713
Score = 30.7 bits (66), Expect = 0.074
Identities = 15/62 (24%), Positives = 23/62 (37%)
Frame = +2
Query: 104 NPDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDY 283
+P Y+P +P Y+P +P Y+P +P Y P +P Y
Sbjct: 1659 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1718
Query: 284 XP 289
P
Sbjct: 1719 SP 1720
Score = 30.7 bits (66), Expect = 0.074
Identities = 15/62 (24%), Positives = 23/62 (37%)
Frame = +2
Query: 104 NPDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDY 283
+P Y+P +P Y+P +P Y+P +P Y P +P Y
Sbjct: 1666 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1725
Query: 284 XP 289
P
Sbjct: 1726 SP 1727
Score = 30.7 bits (66), Expect = 0.074
Identities = 15/62 (24%), Positives = 23/62 (37%)
Frame = +2
Query: 104 NPDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDY 283
+P Y+P +P Y+P +P Y+P +P Y P +P Y
Sbjct: 1673 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1732
Query: 284 XP 289
P
Sbjct: 1733 SP 1734
Score = 30.7 bits (66), Expect = 0.074
Identities = 15/62 (24%), Positives = 23/62 (37%)
Frame = +2
Query: 104 NPDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDY 283
+P Y+P +P Y+P +P Y+P +P Y P +P Y
Sbjct: 1680 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1739
Query: 284 XP 289
P
Sbjct: 1740 SP 1741
Score = 30.7 bits (66), Expect = 0.074
Identities = 15/62 (24%), Positives = 23/62 (37%)
Frame = +2
Query: 104 NPDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDY 283
+P Y+P +P Y+P +P Y+P +P Y P +P Y
Sbjct: 1687 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1746
Query: 284 XP 289
P
Sbjct: 1747 SP 1748
Score = 30.3 bits (65), Expect = 0.098
Identities = 15/62 (24%), Positives = 23/62 (37%)
Frame = +2
Query: 104 NPDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDY 283
+P Y+P +P Y+P +P Y+P +P Y P +P Y
Sbjct: 1582 SPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1641
Query: 284 XP 289
P
Sbjct: 1642 SP 1643
Score = 29.1 bits (62), Expect = 0.23
Identities = 15/62 (24%), Positives = 22/62 (35%)
Frame = +2
Query: 104 NPDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDY 283
+P Y P +P Y+P +P Y+P +P Y P +P Y
Sbjct: 1568 SPAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSY 1627
Query: 284 XP 289
P
Sbjct: 1628 SP 1629
Score = 27.5 bits (58), Expect = 0.69
Identities = 14/62 (22%), Positives = 22/62 (35%)
Frame = +2
Query: 104 NPDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDY 283
+P Y+P +P Y+P +P Y+ +P Y P +P Y
Sbjct: 1575 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSY 1634
Query: 284 XP 289
P
Sbjct: 1635 SP 1636
Score = 27.5 bits (58), Expect = 0.69
Identities = 14/62 (22%), Positives = 22/62 (35%)
Frame = +2
Query: 104 NPDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDY 283
+P Y+P +P Y+ +P Y+P +P Y P +P Y
Sbjct: 1589 SPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1648
Query: 284 XP 289
P
Sbjct: 1649 SP 1650
Score = 27.5 bits (58), Expect = 0.69
Identities = 14/62 (22%), Positives = 22/62 (35%)
Frame = +2
Query: 104 NPDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDY 283
+P Y+ +P Y+P +P Y+P +P Y P +P Y
Sbjct: 1603 SPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1662
Query: 284 XP 289
P
Sbjct: 1663 SP 1664
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 29.1 bits (62), Expect = 0.23
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 170 VHVVD-HNPDYNPGQVHVVDHNPDYYPGQVHVVDHNPDYXPGQVHVV 307
++ +D HN + N V V+ N ++ +V+ NPD+ P + VV
Sbjct: 537 INAIDVHNSEQNLLAVFVIFRNLSHFEANQNVLVQNPDFFPLLIRVV 583
Score = 25.0 bits (52), Expect = 3.7
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +2
Query: 86 VHVVD-HNPDYNPGQVHVVNYNPDYNPGQVHVVDHNPDYNPGQVHVV 223
++ +D HN + N V V+ N + +V+ NPD+ P + VV
Sbjct: 537 INAIDVHNSEQNLLAVFVIFRNLSHFEANQNVLVQNPDFFPLLIRVV 583
Score = 25.0 bits (52), Expect = 3.7
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +2
Query: 143 YNPDYNPGQVHVVDHNPDYNPGQVHVVDHNPDYYPGQVHVV 265
+N + N V V+ N + +V+ NPD++P + VV
Sbjct: 543 HNSEQNLLAVFVIFRNLSHFEANQNVLVQNPDFFPLLIRVV 583
>SPAC1783.07c |pap1|caf3, caf3|transcription factor
Caf3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 552
Score = 25.8 bits (54), Expect = 2.1
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Frame = +2
Query: 173 HVVDHNPDYNPGQVHVVD---HNPDYYPGQVH-VVDHNPDYXPGQVHVVDNSGVPSDGNS 340
H + N D +H +D + + +P Q++ + HN DY V G+P G
Sbjct: 419 HNSNENGDLITNSLHGLDFLENANESFPEQMYPFIKHNKDYISNHPDEVPPDGLPQKGKH 478
Query: 341 D 343
D
Sbjct: 479 D 479
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 24.2 bits (50), Expect = 6.4
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -2
Query: 366 SGFAITTWSLLPSDGTPLL 310
S F + W++LP G P+L
Sbjct: 899 SCFVLRIWNMLPETGVPIL 917
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,574,891
Number of Sequences: 5004
Number of extensions: 33503
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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