Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_O18
         (455 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|...    29   0.34 
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po...    27   1.8  
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom...    26   2.4  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    26   2.4  
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy...    26   3.1  
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    26   3.1  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   4.2  
SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces pom...    25   4.2  
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    25   4.2  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    25   4.2  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    25   7.3  
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   9.6  
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    24   9.6  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    24   9.6  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    24   9.6  
SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyc...    24   9.6  

>SPBC19G7.15 |nup44||nucleoporin Nup44|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 403

 Score = 29.1 bits (62), Expect = 0.34
 Identities = 23/66 (34%), Positives = 27/66 (40%)
 Frame = +2

Query: 257 NSIFKIPNQAPTTTKKPTMTVSAPSAVPTVNTNGNRGRYDTDPDDINSVFKIPTQAPGTV 436
           NSIF    Q PTT+   T T +  S V   N     G  +T P    S    PT+     
Sbjct: 64  NSIFGKTQQQPTTSFSNTTTNAPQSTVFGQNAASRTGNSNTQPLFSWSTVNNPTKPVDET 123

Query: 437 NPVTIP 454
           N  TIP
Sbjct: 124 N-ATIP 128


>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 942

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 170 KMYRILAILVLVGSAHAQANANDIDLEEINSIFKI 274
           K+YR L I+ LVGS     ++ D+ +   +S+ +I
Sbjct: 330 KLYRHLTIVGLVGSIDNDMSSTDVTIGAFSSLHRI 364


>SPCPJ732.01 |vps5||retromer complex subunit
           Vps5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = +2

Query: 272 IPNQAPTTTKKPTMTVSAPSAVPTVNTNGNRGRYDTDPDDINSVFKIPTQAPGTVNPVTI 451
           IPN   T       + SAP+   TV++  ++ +  T   D  +    P  AP ++ P  I
Sbjct: 145 IPNSEQTVDTLDAASSSAPNFTHTVSSASSQKQGSTSLTDTENQKAHPAAAPQSLTPFYI 204


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 278 NQAPTTTKKPTMTVSAPSAVPTVNTNGNRGR 370
           + +PT T  P + VS PSA P  + + N  +
Sbjct: 164 SSSPTNTPSPNLPVSQPSASPHYSGDKNSAK 194


>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 424

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
 Frame = -2

Query: 328 WGTNSH-----GWFLSSCWCLIRYFENAVYFFEVYIIGVCL 221
           WG   H      W ++  WCL   F + + +F V   GV L
Sbjct: 349 WGMARHINYFGDWIMAWAWCLPAGFGSPIPYFYVAYFGVLL 389


>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = +2

Query: 302 KPTMTVSAPSAVPT 343
           KPT T SAPSA PT
Sbjct: 292 KPTATTSAPSASPT 305


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 260 SIFKIPNQAPTTTKKPTMTVSAPSAVPTVNTNG 358
           S F+ PN+AP+T  +      +P+     NTNG
Sbjct: 295 SNFRSPNRAPSTNNRYRGWNGSPTPAAGNNTNG 327


>SPAC5D6.09c |mug86||acetate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 304

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 12/54 (22%), Positives = 24/54 (44%)
 Frame = -2

Query: 205 DQYQDS*YSVHLSTVCRFFYEIYFKTKTLNSNITDNTFLAVVSLCFLIIFIFFV 44
           D   D  Y++ L  +C F +       T+ S +   +    + +CFL++   F+
Sbjct: 180 DDPNDFNYAIGLYLICWFIFTFLVLLCTVRSTLAFFSLFMSLDVCFLLLACAFL 233


>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +2

Query: 170 KMYRILAILVLVGSAHAQANANDIDLEEINSIFK--IPNQAPTTTKKPTMTV 319
           K+ ++ + +    +AHA  NANDI    +N   K  +    P  +KK  +++
Sbjct: 43  KVVQLRSFIPFKNAAHALENANDISEGVLNDFLKNFLELNLPKASKKKKVSL 94


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 166 TVCRFFYEIYFKTKTLNSNITDNTFLAVVSLCFLIIFI 53
           TV ++ Y+I   + T+  N     FL  VS+C +I+ +
Sbjct: 45  TVPKWAYKIVTYSLTIQFNFKSLLFLFFVSICVVILVV 82


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +2

Query: 275 PNQAPTTTKKPTMTVSAPSAVPTVN-TNGNR 364
           P   P+T ++     +AP   P VN TN NR
Sbjct: 315 PQDQPSTQQQQPQRTAAPPNNPNVNATNNNR 345


>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 608

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +2

Query: 260 SIFKIPNQAPTTTKKPTMTVSAPSAVPTVNTNGNRGRYDTDPDDINSV 403
           S+ + P  AP   K P      PS  PTV    + G+    P+D  S+
Sbjct: 415 SVSRKPTGAPAIPKLPP---KHPSRQPTVRATPSTGKQIEPPNDEPSI 459


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +2

Query: 257 NSIFKIPNQAPTTTKKPTMTVSAPSAV-PTVNTNGNRGRYDTDPDDIN 397
           NSI+KIP+ +      P +T  +PS + PT   +   GR   +P  +N
Sbjct: 403 NSIYKIPSASMVNLSSPLVT--SPSGLNPTGRPSRFGGRVRGNPLTMN 448


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
 Frame = +2

Query: 242 DLEEINSI-FKIPNQAPTTTKKPTMTVSAPSAVPTVNTNGNRGRYDT-DPDDINSVFKIP 415
           DL+ +N+I F IP       + P   +    +    + + +   + T D D +  ++ +P
Sbjct: 375 DLDLLNNISFPIPRSINAIQQLPCFLIDTGISAKEYDFSYDGTVFATVDKDALIKIYTVP 434

Query: 416 TQAPGTVNPVTIP 454
           T  P T +   +P
Sbjct: 435 TTFPSTPDKRPVP 447


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = +2

Query: 290 TTTKKPTMTVSAPSAVPTVNTNGNRGRYDTDPDDINSVFKIPTQAPGTVNPVT 448
           TT   PT  V+  + VP   T+ N           N+   +PT    +++P+T
Sbjct: 119 TTVVPPTTHVNTTTVVPPT-THVNTTTVVPPTTHANTTSFVPTTTESSIHPIT 170


>SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 117

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = +2

Query: 260 SIFKIPNQAPTTTKKPTMTVSAPSAVP--TVNTNGNRGRYDTDPDDI 394
           +I  +  Q  T  K   MTV     VP  T++  GN  RY   PD +
Sbjct: 28  TITSVDMQMNTHLKAVKMTVKGREPVPVETLSIRGNNIRYYILPDSL 74


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,761,688
Number of Sequences: 5004
Number of extensions: 34743
Number of successful extensions: 129
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)