Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_O18
(455 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical ... 32 0.23
Z77666-12|CAJ43911.2| 896|Caenorhabditis elegans Hypothetical p... 31 0.40
Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical pr... 31 0.40
U53341-6|AAC69106.1| 790|Caenorhabditis elegans Hypothetical pr... 31 0.40
U53341-5|AAL06020.1| 842|Caenorhabditis elegans Hypothetical pr... 31 0.40
Z49911-8|CAD59151.1| 250|Caenorhabditis elegans Hypothetical pr... 31 0.53
Z82260-14|CAB05142.2| 521|Caenorhabditis elegans Hypothetical p... 30 0.92
Z73104-10|CAA97437.2| 521|Caenorhabditis elegans Hypothetical p... 30 0.92
U50197-2|AAA91255.2| 624|Caenorhabditis elegans Hypothetical pr... 30 0.92
Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical pr... 29 1.2
D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein. 29 1.2
U49956-1|AAO38615.1| 669|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr... 28 2.8
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr... 28 2.8
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 28 2.8
U13071-1|AAL65794.1| 462|Caenorhabditis elegans Hypothetical pr... 28 2.8
AF132883-1|AAD25092.1| 925|Caenorhabditis elegans UNC-52/Perlec... 28 2.8
Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical pr... 28 3.7
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 28 3.7
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 28 3.7
AF125971-9|AAD14764.1| 442|Caenorhabditis elegans Hypothetical ... 28 3.7
Z75532-2|CAA99812.1| 839|Caenorhabditis elegans Hypothetical pr... 27 4.9
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 27 4.9
Z46787-11|CAA86750.1| 610|Caenorhabditis elegans Hypothetical p... 27 6.5
U56966-10|AAA98722.1| 686|Caenorhabditis elegans Amyloid precur... 27 6.5
U56966-9|AAK68242.1| 684|Caenorhabditis elegans Amyloid precurs... 27 6.5
U00240-1|AAC46470.1| 680|Caenorhabditis elegans beta-amyloid pr... 27 6.5
Z46794-11|CAA86785.2| 1470|Caenorhabditis elegans Hypothetical p... 27 8.6
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter... 27 8.6
U50191-8|AAK31551.3| 296|Caenorhabditis elegans Hypothetical pr... 27 8.6
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr... 27 8.6
AC024817-16|AAF59585.2| 610|Caenorhabditis elegans Hypothetical... 27 8.6
>AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical
protein M01E10.2 protein.
Length = 1286
Score = 31.9 bits (69), Expect = 0.23
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +2
Query: 281 QAPTTTKKPTMTVSAPSAVPTVNTNGNRGRYDTDPDDINSVFKIPTQAPGTVNPVT 448
+AP TT+ P T + P+ N + Y++ D S PTQ P T P T
Sbjct: 237 KAPPTTRTPPTTRTPPTTSQPAEFNIDDDDYESSEDISESHTTPPTQTPPTQTPPT 292
>Z77666-12|CAJ43911.2| 896|Caenorhabditis elegans Hypothetical
protein K08E7.5c protein.
Length = 896
Score = 31.1 bits (67), Expect = 0.40
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +2
Query: 314 TVSAPSAVPTVNTNGNRGRYDTDPDDINSVFKIPTQAPGTVNPVTI 451
T++APS +P N+N D D N V +P + NP TI
Sbjct: 442 TITAPSDIPRANSNFEEYPDDGGYDGTNDVAIVPLRTQHGTNPSTI 487
>Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical
protein K08E7.5a protein.
Length = 1221
Score = 31.1 bits (67), Expect = 0.40
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +2
Query: 314 TVSAPSAVPTVNTNGNRGRYDTDPDDINSVFKIPTQAPGTVNPVTI 451
T++APS +P N+N D D N V +P + NP TI
Sbjct: 767 TITAPSDIPRANSNFEEYPDDGGYDGTNDVAIVPLRTQHGTNPSTI 812
>U53341-6|AAC69106.1| 790|Caenorhabditis elegans Hypothetical
protein F49E10.2a protein.
Length = 790
Score = 31.1 bits (67), Expect = 0.40
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +2
Query: 239 IDLEEINSIFKIPNQAPTTTKKPTMTVSAPSAVPTVNT 352
+ L +++++ + + TTT+KP+ T + PS PT T
Sbjct: 575 LPLRKVSTVPPTTSTSSTTTQKPSTTTTVPSTTPTSTT 612
>U53341-5|AAL06020.1| 842|Caenorhabditis elegans Hypothetical
protein F49E10.2b protein.
Length = 842
Score = 31.1 bits (67), Expect = 0.40
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +2
Query: 239 IDLEEINSIFKIPNQAPTTTKKPTMTVSAPSAVPTVNT 352
+ L +++++ + + TTT+KP+ T + PS PT T
Sbjct: 575 LPLRKVSTVPPTTSTSSTTTQKPSTTTTVPSTTPTSTT 612
>Z49911-8|CAD59151.1| 250|Caenorhabditis elegans Hypothetical
protein M28.10 protein.
Length = 250
Score = 30.7 bits (66), Expect = 0.53
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +2
Query: 266 FKIPNQAPTTTKKPTMTVSAPSAVPTVNTNGNRGRYDTDPDDINSVFKIPTQAPG-TVNP 442
F P+ +T P+ T S S V V NG+ T P ++ + T APG TV+
Sbjct: 141 FSPPSTIAPSTIAPSTTASDVSTVNPVTDNGSTVSQGTQPTGGSTAAPVSTDAPGSTVSG 200
Query: 443 VT 448
T
Sbjct: 201 AT 202
>Z82260-14|CAB05142.2| 521|Caenorhabditis elegans Hypothetical
protein C32H11.1 protein.
Length = 521
Score = 29.9 bits (64), Expect = 0.92
Identities = 20/69 (28%), Positives = 34/69 (49%)
Frame = +2
Query: 200 LVGSAHAQANANDIDLEEINSIFKIPNQAPTTTKKPTMTVSAPSAVPTVNTNGNRGRYDT 379
+V S + +A +I+L+ I+SI + + TT + +VP V+TN R
Sbjct: 129 VVWSKYPPGSAMNIELDGIHSISGVASSFYTTYTAINQVMIVGFSVPDVDTNLLRQSAIY 188
Query: 380 DPDDINSVF 406
D D +N+ F
Sbjct: 189 DGDSVNAKF 197
>Z73104-10|CAA97437.2| 521|Caenorhabditis elegans Hypothetical
protein C32H11.1 protein.
Length = 521
Score = 29.9 bits (64), Expect = 0.92
Identities = 20/69 (28%), Positives = 34/69 (49%)
Frame = +2
Query: 200 LVGSAHAQANANDIDLEEINSIFKIPNQAPTTTKKPTMTVSAPSAVPTVNTNGNRGRYDT 379
+V S + +A +I+L+ I+SI + + TT + +VP V+TN R
Sbjct: 129 VVWSKYPPGSAMNIELDGIHSISGVASSFYTTYTAINQVMIVGFSVPDVDTNLLRQSAIY 188
Query: 380 DPDDINSVF 406
D D +N+ F
Sbjct: 189 DGDSVNAKF 197
>U50197-2|AAA91255.2| 624|Caenorhabditis elegans Hypothetical
protein F25E2.2 protein.
Length = 624
Score = 29.9 bits (64), Expect = 0.92
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 284 APTTTKKPTMTVSAPSAVPTVNTN 355
APTTT+KPT T + P+ T T+
Sbjct: 442 APTTTQKPTTTTTTPAPTTTSTTS 465
>Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical
protein F40E10.1 protein.
Length = 605
Score = 29.5 bits (63), Expect = 1.2
Identities = 22/55 (40%), Positives = 24/55 (43%)
Frame = +2
Query: 284 APTTTKKPTMTVSAPSAVPTVNTNGNRGRYDTDPDDINSVFKIPTQAPGTVNPVT 448
APTTT T T +AP VPTV+ R T S TQAP T T
Sbjct: 477 APTTTS--TTTTTAPITVPTVSPTTTTTR-QTTTTARTSTTTTTTQAPPTTTTST 528
>D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein.
Length = 605
Score = 29.5 bits (63), Expect = 1.2
Identities = 22/55 (40%), Positives = 24/55 (43%)
Frame = +2
Query: 284 APTTTKKPTMTVSAPSAVPTVNTNGNRGRYDTDPDDINSVFKIPTQAPGTVNPVT 448
APTTT T T +AP VPTV+ R T S TQAP T T
Sbjct: 477 APTTTS--TTTTTAPITVPTVSPTTTTTR-QTTTTARTSTTTTTTQAPPTTTTST 528
>U49956-1|AAO38615.1| 669|Caenorhabditis elegans Hypothetical
protein M03A1.3 protein.
Length = 669
Score = 28.7 bits (61), Expect = 2.1
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -2
Query: 388 IGVCIIASSITVGIYSRNS*W-GTNSHGWF 302
IGVC I +SI + S N W GT S W+
Sbjct: 486 IGVCCIVTSILCILISTNWTWKGTGSEAWY 515
>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 28.3 bits (60), Expect = 2.8
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +2
Query: 281 QAPTTTKKPTMTVSAPSAVPTVNTNGNRGRYDTDPDDINSVFKIPTQAPGTVNPVT 448
+ PTTT++PT T P+ T T Y+T DD + IP + T T
Sbjct: 3012 EEPTTTEEPTTTTEEPT---TTTTEEPYHIYETSRDDDPEII-IPVETTTTSTTTT 3063
>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 28.3 bits (60), Expect = 2.8
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +2
Query: 281 QAPTTTKKPTMTVSAPSAVPTVNTNGNRGRYDTDPDDINSVFKIPTQAPGTVNPVT 448
+ PTTT++PT T P+ T T Y+T DD + IP + T T
Sbjct: 3012 EEPTTTEEPTTTTEEPT---TTTTEEPYHIYETSRDDDPEII-IPVETTTTSTTTT 3063
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 28.3 bits (60), Expect = 2.8
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +2
Query: 275 PNQAPTTTKKPTMTVSAPSAVPTVNT 352
P TT KPT T + P+ PT T
Sbjct: 259 PTTTTQTTTKPTTTTTTPTTTPTTTT 284
>U13071-1|AAL65794.1| 462|Caenorhabditis elegans Hypothetical
protein T22F7.5 protein.
Length = 462
Score = 28.3 bits (60), Expect = 2.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 284 APTTTKKPTMTVSAPSAVPTVNTNGNRGRYDTDPD 388
AP + P TV P+ P+V + GN G+ PD
Sbjct: 132 APGAPETPGATVPPPTMSPSVTSGGNPGKSLCPPD 166
>AF132883-1|AAD25092.1| 925|Caenorhabditis elegans UNC-52/Perlecan
protein.
Length = 925
Score = 28.3 bits (60), Expect = 2.8
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = +2
Query: 281 QAPTTTKKPTMTVSAPSAVPTVNTNGNRGRYDTDPDDINSVFKIPTQAPGTVNPVT 448
+ PTTT++PT T P+ T T Y+T DD + IP + T T
Sbjct: 562 EEPTTTEEPTTTTEEPT---TTTTEEPYHIYETSRDDDPEII-IPVETTTTSTTTT 613
>Z72504-5|CAA96602.2| 812|Caenorhabditis elegans Hypothetical
protein C29E6.1a protein.
Length = 812
Score = 27.9 bits (59), Expect = 3.7
Identities = 23/93 (24%), Positives = 33/93 (35%)
Frame = +2
Query: 176 YRILAILVLVGSAHAQANANDIDLEEINSIFKIPNQAPTTTKKPTMTVSAPSAVPTVNTN 355
+ + +L G A N + L + + Q TTTKKP+ T S T T
Sbjct: 343 HALFELLSKTGDDEALQNTFPLPLTTTTEVIR---QVTTTTKKPSTTTSTKKLTTTTTTT 399
Query: 356 GNRGRYDTDPDDINSVFKIPTQAPGTVNPVTIP 454
+ T + V I T + P T P
Sbjct: 400 PKPSQKPTTTTTKSPVV-ITTTTKTSPKPTTSP 431
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 27.9 bits (59), Expect = 3.7
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +2
Query: 278 NQAPTTTKKPTMTVSAPSAVPTVNTNGNRGRYDTDPDDINSVFKIPTQAPGTVNPVT 448
++AP T PT+ ++P+ +PT + G T P ++ + PT AP VNP +
Sbjct: 609 SKAPVVTTSPTLAPTSPTKLPT-SPPSTVGTSPTAPANLTT----PTTAP--VNPTS 658
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 27.9 bits (59), Expect = 3.7
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +2
Query: 278 NQAPTTTKKPTMTVSAPSAVPTVNTNGNRGRYDTDPDDINSVFKIPTQAPGTVNPVT 448
++AP T PT+ ++P+ +PT + G T P ++ + PT AP VNP +
Sbjct: 665 SKAPVVTTSPTLAPTSPTKLPT-SPPSTVGTSPTAPANLTT----PTTAP--VNPTS 714
>AF125971-9|AAD14764.1| 442|Caenorhabditis elegans Hypothetical
protein Y4C6B.1 protein.
Length = 442
Score = 27.9 bits (59), Expect = 3.7
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = +2
Query: 239 IDLEEINSIFKIPNQAPTTTKKPTMTVSAPSAVPTVNTNGNRGRYDTDPDDINSVFKIPT 418
I L EI S K+ P+ KP S+P ++P T + Y TD S+ K
Sbjct: 330 IPLSEIKSDNKLSTVTPS---KPAEKKSSPKSLPPAETIVSNRPYLTDIAHGRSMLKKTV 386
Query: 419 QAPG 430
++PG
Sbjct: 387 RSPG 390
>Z75532-2|CAA99812.1| 839|Caenorhabditis elegans Hypothetical
protein C54G10.2 protein.
Length = 839
Score = 27.5 bits (58), Expect = 4.9
Identities = 16/63 (25%), Positives = 25/63 (39%)
Frame = +2
Query: 260 SIFKIPNQAPTTTKKPTMTVSAPSAVPTVNTNGNRGRYDTDPDDINSVFKIPTQAPGTVN 439
S K+P AP T +KP P + + + +D + ++S T P TV
Sbjct: 139 SASKLPKVAPKTVEKPKTPAKKPVEISPSTKENTKTKKVSDDEFVDSDDSFDTFTPITVK 198
Query: 440 PVT 448
T
Sbjct: 199 KKT 201
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 27.5 bits (58), Expect = 4.9
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = +2
Query: 245 LEEINSIFKIPN-QAPTTTKKPTMTVSAPSAV-PTVNTNGNR--GRYDTDPDDINSV 403
+ E NSI I + PTT K T+T PS+V P+ N + N G P + +++
Sbjct: 666 ISEENSIENISKTKTPTTVPKSTITGRMPSSVNPSDNLSNNEMDGNAHNQPSEFSNL 722
>Z46787-11|CAA86750.1| 610|Caenorhabditis elegans Hypothetical
protein C16C10.12 protein.
Length = 610
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -2
Query: 154 FFYEIYFKTKTLNSNITDNTFLAVVSLCFLIIFIFFVG 41
F+ E+ K + N DN L V+ LC ++IF + G
Sbjct: 564 FYRELILKQFSFNK---DNYQLDVIGLCSIVIFFYLAG 598
>U56966-10|AAA98722.1| 686|Caenorhabditis elegans Amyloid
precursor-like protein1, isoform a protein.
Length = 686
Score = 27.1 bits (57), Expect = 6.5
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = +2
Query: 248 EEINSIFKIPNQAPTTTKKPTMTVSAPSAVPTVNTNGNR--GRYDTDPDDINSVFKIP 415
+E + K+ +APTTT KP +PT ++ Y D DD V K P
Sbjct: 466 DEFSKNAKLDVKAPTTTAKPVKETDNAKVLPTEASDSEEEADEYYEDEDD-EQVKKTP 522
>U56966-9|AAK68242.1| 684|Caenorhabditis elegans Amyloid
precursor-like protein1, isoform b protein.
Length = 684
Score = 27.1 bits (57), Expect = 6.5
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = +2
Query: 248 EEINSIFKIPNQAPTTTKKPTMTVSAPSAVPTVNTNGNR--GRYDTDPDDINSVFKIP 415
+E + K+ +APTTT KP +PT ++ Y D DD V K P
Sbjct: 466 DEFSKNAKLDVKAPTTTAKPVKETDNAKVLPTEASDSEEEADEYYEDEDD-EQVKKTP 522
>U00240-1|AAC46470.1| 680|Caenorhabditis elegans beta-amyloid
protein precursor protein.
Length = 680
Score = 27.1 bits (57), Expect = 6.5
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = +2
Query: 248 EEINSIFKIPNQAPTTTKKPTMTVSAPSAVPTVNTNGNR--GRYDTDPDDINSVFKIP 415
+E + K+ +APTTT KP +PT ++ Y D DD V K P
Sbjct: 460 DEFSKNAKLDVKAPTTTAKPVKETDNAKVLPTEASDSEEEADEYYEDEDD-EQVKKTP 516
>Z46794-11|CAA86785.2| 1470|Caenorhabditis elegans Hypothetical
protein R06F6.8b protein.
Length = 1470
Score = 26.6 bits (56), Expect = 8.6
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +2
Query: 230 ANDIDLEEINSIFKIPNQAPTTTKKPTMTVSAPSA 334
A I E+I++ F+ P + T+ TVS+PSA
Sbjct: 964 ARSIGSEDIDAFFRTPPPSAKTSLSRRPTVSSPSA 998
>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 6 protein.
Length = 1254
Score = 26.6 bits (56), Expect = 8.6
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +2
Query: 248 EEINSIFKIPNQAPTTTKKPTMT-VSAPSAVPTVNTNGNRGRYDTDPDDINSVFKIPTQA 424
E + KI + TTT++PT T + A ++ + T+ + +I S +I T++
Sbjct: 669 ETTTTELKITTEGSTTTEEPTTTAIFAEASTGIITTDEETTSTTSTTPEITSTKEIVTES 728
Query: 425 PGTVNPVTI 451
T V++
Sbjct: 729 AITQTSVSV 737
>U50191-8|AAK31551.3| 296|Caenorhabditis elegans Hypothetical
protein T14B4.3 protein.
Length = 296
Score = 26.6 bits (56), Expect = 8.6
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +2
Query: 347 NTNGNRGRYDTDPDDINSVFKI 412
NT GN YDT +D+ +++++
Sbjct: 133 NTEGNHANYDTYKEDLQNMYRL 154
>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical protein
ZK783.1 protein.
Length = 2585
Score = 26.6 bits (56), Expect = 8.6
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 221 QANANDIDLEEINSIFKIPNQA-PTTTKKPTMTVSAPSAVPTVNT 352
Q N I+++E NS Q PTT ++ T++ + + PT T
Sbjct: 1944 QPNREKIEIDEENSSSSNSGQEKPTTKERTTVSTTVSTTTPTEET 1988
>AC024817-16|AAF59585.2| 610|Caenorhabditis elegans Hypothetical
protein Y54G2A.13 protein.
Length = 610
Score = 26.6 bits (56), Expect = 8.6
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = +2
Query: 257 NSIFKIPNQAPTTT-KKPTMTVSAPSAVPTVNTNGNRGRYDTDPDDINSVFKIPTQAPGT 433
N + Q PTT+ +K T A S+ PT T + T P +S + + + T
Sbjct: 192 NETTSVTTQNPTTSNQKNETTDEATSSPPTTTTPTTTLKPTTSPQKPDSTEEATSPSQST 251
Query: 434 VNPV 445
PV
Sbjct: 252 TTPV 255
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,777,295
Number of Sequences: 27780
Number of extensions: 199193
Number of successful extensions: 865
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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