Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_O16
(299 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 26 1.0
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ... 25 2.4
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual 25 3.1
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ... 25 3.1
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 24 4.2
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce... 24 5.5
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl... 24 5.5
SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein Sbp1|Schizosa... 23 7.3
SPBC839.12 |rpc31||DNA-directed RNA polymerase III complex subun... 23 9.6
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 23 9.6
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 23 9.6
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 26.2 bits (55), Expect = 1.0
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +3
Query: 108 TSKTY-LEHLAIFLAGNEEREKIAPRSAYEQRDDLSIING 224
T +T+ +E++A +LA ER +AP DDL + G
Sbjct: 963 TIRTFVIENIAKYLASVRERRDLAPMLEEPDMDDLDDMEG 1002
>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 879
Score = 25.0 bits (52), Expect = 2.4
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -3
Query: 195 VHTLTAVLSSHVLRFPRGKWRGVQDRSWMWIVTAVIE 85
+H + S L F +GKWR +D +W++ +E
Sbjct: 489 LHAVQGYYSFPYLTFSKGKWR--KDGDSLWVLAYNVE 523
>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 478
Score = 24.6 bits (51), Expect = 3.1
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -2
Query: 82 WSFSFQPLISTIAVSTGTVLRRE 14
+ FSF L S ++V +GTVL ++
Sbjct: 275 YGFSFNYLDSVVSVRSGTVLNKQ 297
>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 639
Score = 24.6 bits (51), Expect = 3.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 55 RSKAGRKNSKFYYSSYNPHPRPIL 126
R K N+K + S NP PRPIL
Sbjct: 227 RLKDHLMNTKDAFVSVNPKPRPIL 250
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2685
Score = 24.2 bits (50), Expect = 4.2
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -3
Query: 180 AVLSSHVLRFPRGKWRGVQDRSWM-WIVTAVIEFGV-FPS 67
AV S++LR KW +SWM W+ ++ E + FPS
Sbjct: 127 AVYMSNLLRNVEQKWIQFLHKSWMKWLHISIQESQLTFPS 166
>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 23.8 bits (49), Expect = 5.5
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -3
Query: 204 RLVVHTLTAVLSSHVLRFPRGKWRGVQDRSW 112
R V+ + VL+ V++ PRG G+ + W
Sbjct: 48 RQVIRYGSVVLTHIVMKLPRGARSGIVAKKW 78
>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
Plh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 623
Score = 23.8 bits (49), Expect = 5.5
Identities = 8/32 (25%), Positives = 18/32 (56%)
Frame = +1
Query: 67 GRKNSKFYYSSYNPHPRPILNTSPFSSRETKN 162
G+ + YY + NP +P++++S + +N
Sbjct: 487 GKPTERGYYYTNNPEGQPVIDSSVNDGTKVEN 518
>SPBC1773.07c |sbp1|yrb1|Ran GTPase binding protein
Sbp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 23.4 bits (48), Expect = 7.3
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -3
Query: 123 DRSWMWIVTAVIEFG 79
DRSW+W V A + G
Sbjct: 163 DRSWVWTVAADVSEG 177
>SPBC839.12 |rpc31||DNA-directed RNA polymerase III complex subunit
Rpc31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 23.0 bits (47), Expect = 9.6
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 104 IHIQDLS*TPRHFPRGKRRT*EDSTAVSV*TTRRPVDYK 220
+ + DL P+ FP R+T ++A RR +D K
Sbjct: 100 LSLSDLDLDPKFFPEELRKTLGAASATGRKRARRKLDMK 138
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 23.0 bits (47), Expect = 9.6
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3
Query: 123 LEHLAIFLAGNEEREK 170
LEH AI L NE +EK
Sbjct: 995 LEHAAIVLGNNELKEK 1010
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 23.0 bits (47), Expect = 9.6
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 80 EFFLPAFDLDHSSFHGYRL 24
+FF+ F+ D S+FHG L
Sbjct: 201 DFFVVDFNEDFSAFHGQTL 219
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,190,203
Number of Sequences: 5004
Number of extensions: 21743
Number of successful extensions: 70
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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