Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_O16
(299 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0246 - 16393943-16394410 27 2.1
10_08_0838 - 20927020-20927207,20927288-20927491,20927654-209282... 27 2.1
10_02_0197 + 6596197-6596402,6596766-6596828,6599679-6599795,660... 27 3.6
06_03_0420 + 20593468-20593719,20594534-20594581,20595155-20595970 27 3.6
04_04_0181 - 23363893-23364458,23364548-23364626,23364749-233648... 27 3.6
08_01_0911 - 8976912-8977127,8977743-8977867,8977937-8978058,897... 26 6.3
09_04_0217 + 15739279-15739365,15739460-15739621,15739726-157397... 25 8.3
08_02_0550 + 18509365-18509589,18509668-18510644,18510828-185118... 25 8.3
08_01_0182 - 1534448-1534557,1534925-1535987 25 8.3
06_02_0303 + 14022428-14022652,14023247-14024159,14024310-140247... 25 8.3
06_02_0014 + 10585888-10586422,10586621-10586652,10587127-10587216 25 8.3
04_04_1093 + 30825722-30826168,30826457-30826608,30826926-308270... 25 8.3
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716... 25 8.3
>12_02_0246 - 16393943-16394410
Length = 155
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 23 QDGTRGNCYGRDQRLEGKTPNSITAVTIHIQD 118
QDG N + RL+G TP S+ A + + D
Sbjct: 23 QDGLAPNGVHQGHRLDGSTPESLHAAGVRVGD 54
>10_08_0838 - 20927020-20927207,20927288-20927491,20927654-20928297,
20928549-20928788,20928884-20928978,20929087-20929434,
20929824-20930042,20930422-20930487,20931191-20931362,
20931456-20931703,20931933-20932073,20932238-20932330,
20932421-20932471,20933571-20933693,20933793-20934035,
20934131-20934211,20935245-20935340,20935535-20936320,
20936443-20937012,20937322-20937427,20938102-20938206,
20938311-20938432,20939321-20939413,20940081-20940104
Length = 1685
Score = 27.5 bits (58), Expect = 2.1
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 8 SRLSSQDGTRGNCYGRDQRLEGKTPNSITAVTIHIQ 115
S +S Q G GNC + G T +S+ + H+Q
Sbjct: 1409 SEVSLQSGDHGNCIAQATEALGVTSSSVDSFFAHLQ 1444
>10_02_0197 +
6596197-6596402,6596766-6596828,6599679-6599795,
6600311-6600545,6600771-6600929,6601159-6601310,
6602511-6602571
Length = 330
Score = 26.6 bits (56), Expect = 3.6
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -3
Query: 159 LRFPRGKWRGVQDRSWMWI-VTAVIEFGVFPSSL 61
L F RGKWR + R++ WI A I + V P SL
Sbjct: 65 LIFERGKWRDMDWRAFGWIFFNAFIGYAV-PMSL 97
>06_03_0420 + 20593468-20593719,20594534-20594581,20595155-20595970
Length = 371
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = +1
Query: 67 GRKNSKFYYSSYNPHPRPILNTSPFSS 147
GR S SSY P PR N SP SS
Sbjct: 114 GRSASPSPCSSYQPSPRASYNPSPASS 140
>04_04_0181 -
23363893-23364458,23364548-23364626,23364749-23364818,
23367534-23367538
Length = 239
Score = 26.6 bits (56), Expect = 3.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 94 SSYNPHPRPILNTSPFSSRETKNVRR*H 177
+SY+ HP P +SP + T +V R H
Sbjct: 171 ASYSAHPSPCYRSSPLAGGYTLDVARSH 198
>08_01_0911 -
8976912-8977127,8977743-8977867,8977937-8978058,
8978283-8978422
Length = 200
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 183 TAVLSSHVLRFPRGKWRGVQDRSWMWIVTAV 91
T++LS+H RG GV+ RS W++ +V
Sbjct: 136 TSLLSAHGSSHSRGFLGGVECRSGFWVMWSV 166
>09_04_0217 +
15739279-15739365,15739460-15739621,15739726-15739794,
15740143-15740275,15740873-15741105,15741462-15741526,
15743252-15743327,15744076-15744144,15744233-15744409,
15745349-15745633
Length = 451
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 180 RSAYEQRDDLSIINGLN*TIYHDTNLFLY 266
RSA E+ D+L + LN HD +LF Y
Sbjct: 209 RSAKEEADELLMEAALNNNQVHDVSLFDY 237
>08_02_0550 +
18509365-18509589,18509668-18510644,18510828-18511802,
18511885-18512142,18512216-18512326,18512418-18512496,
18512595-18512687,18512773-18512958
Length = 967
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 52 SRSKAGRKNSKFYYSSYNPHPRP 120
S S +G S Y+S +PHP P
Sbjct: 30 SSSSSGEAGSDSYHSPSDPHPSP 52
>08_01_0182 - 1534448-1534557,1534925-1535987
Length = 390
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3
Query: 207 GRLVVHTLTAVLSSHVLRFPRGKWR 133
G+ VV+ LTA HVLR P G R
Sbjct: 191 GKKVVYCLTAGGDVHVLRLPAGGQR 215
>06_02_0303 +
14022428-14022652,14023247-14024159,14024310-14024700,
14024949-14025206,14025284-14025394,14025486-14025564,
14025842-14026027
Length = 720
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 52 SRSKAGRKNSKFYYSSYNPHPRP 120
S S +G S Y+S +PHP P
Sbjct: 30 SSSSSGEAGSDSYHSPSDPHPSP 52
>06_02_0014 + 10585888-10586422,10586621-10586652,10587127-10587216
Length = 218
Score = 25.4 bits (53), Expect = 8.3
Identities = 6/15 (40%), Positives = 12/15 (80%)
Frame = -3
Query: 147 RGKWRGVQDRSWMWI 103
RG+W ++D+ W+W+
Sbjct: 92 RGRWIHLRDQPWLWL 106
>04_04_1093 +
30825722-30826168,30826457-30826608,30826926-30827048,
30827240-30827384,30828032-30828093,30828373-30828586,
30829671-30830585,30830827-30831076,30831164-30831432
Length = 858
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 27 TVPVETAMVEIKGWKE 74
T P E +VE+KGWKE
Sbjct: 597 TCPGECFVVEMKGWKE 612
>01_01_0908 +
7158172-7158356,7159436-7159866,7159953-7161061,
7161372-7162820
Length = 1057
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +3
Query: 123 LEHLAIFLAGNEEREKIAPRSAYEQRDDLSIINGLN*TIYHDTNL 257
+ H AGN +K+ P ++ + D+ NGL+ T H T++
Sbjct: 464 VHHTVAHPAGNLSNKKVTPTASTQHDDENDTENGLD-TNMHKTDV 507
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,443,785
Number of Sequences: 37544
Number of extensions: 136721
Number of successful extensions: 410
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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