Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_O16
         (299 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC035971-1|AAH35971.1|  414|Homo sapiens HERV-H LTR-associating ...    27   8.2  
AF126162-1|AAD48396.1|  414|Homo sapiens HERV-H LTR associating ...    27   8.2  

>BC035971-1|AAH35971.1|  414|Homo sapiens HERV-H LTR-associating 2
           protein.
          Length = 414

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +1

Query: 19  FSRRYPWKLLWSRSKAGRKNSKFYYSSYNPHPRPILNTSPFS 144
           FS    +K+ WSR K+G  +   YY S + +   I+N S FS
Sbjct: 250 FSPNQDFKVTWSRMKSGTFSVLAYYLSSSQN--TIINESRFS 289


>AF126162-1|AAD48396.1|  414|Homo sapiens HERV-H LTR associating
           protein 2 protein.
          Length = 414

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +1

Query: 19  FSRRYPWKLLWSRSKAGRKNSKFYYSSYNPHPRPILNTSPFS 144
           FS    +K+ WSR K+G  +   YY S + +   I+N S FS
Sbjct: 250 FSPNQDFKVTWSRMKSGTFSVLAYYLSSSQN--TIINESRFS 289


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,725,344
Number of Sequences: 237096
Number of extensions: 738793
Number of successful extensions: 1600
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1600
length of database: 76,859,062
effective HSP length: 76
effective length of database: 58,839,766
effective search space used: 1353314618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)