Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_O16
         (299 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   0.61 
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   0.61 
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   1.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   1.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   1.4  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   3.3  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    20   5.7  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    20   5.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   7.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   7.6  

>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 0.61
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +1

Query: 4   LQPTLFSRRYP-WKLLWSRSKAGRKNSKFYYSSYNPHPRPILNTS 135
           LQPT F   Y  ++ L  R +    N     SSYN   RP+ N S
Sbjct: 35  LQPTYFHHTYIIYESLCGRHEKRLLNELL--SSYNTLERPVANES 77


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 0.61
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +1

Query: 4   LQPTLFSRRYP-WKLLWSRSKAGRKNSKFYYSSYNPHPRPILNTS 135
           LQPT F   Y  ++ L  R +    N     SSYN   RP+ N S
Sbjct: 35  LQPTYFHHTYIIYESLCGRHEKRLLNELL--SSYNTLERPVANES 77


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 43  LLWSRSKAGRKNSKFYYSSYNPHPR 117
           LL S  +  + N  FY +SY P  R
Sbjct: 8   LLGSEEEGNQLNRSFYSASYPPQNR 32


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
 Frame = +1

Query: 64  AGRKNSKFYY----SSYNPHPRPILNTS 135
           AG  ++K  Y    S+YN   RP++NTS
Sbjct: 24  AGNPDAKRLYDDLLSNYNKLVRPVVNTS 51


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 4/28 (14%)
 Frame = +1

Query: 64  AGRKNSKFYY----SSYNPHPRPILNTS 135
           AG  ++K  Y    S+YN   RP++NTS
Sbjct: 24  AGNPDAKRLYDDLLSNYNKLVRPVVNTS 51


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +1

Query: 73  KNSKFYYSSYNPHPRPILNTSPFS 144
           K    YYS+ + H    +NT  F+
Sbjct: 258 KTQNLYYSAMSSHNLNYVNTKQFT 281


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 201 LVVHTLTAVLSSHVLRFPRGKWRGVQDR 118
           L V   T  LS H+L     +WR ++ R
Sbjct: 107 LGVFERTEPLSPHLLNLEVERWRPLRSR 134


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 79  SKFYYSSYNPHPRPILNTSPF 141
           +  YYS    H    +NT+PF
Sbjct: 261 NNLYYSPLASHGLYYVNTAPF 281


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +2

Query: 41  NCYGRDQRL 67
           N YGRDQ+L
Sbjct: 891 NLYGRDQQL 899


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.8 bits (39), Expect = 7.6
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +2

Query: 41  NCYGRDQRL 67
           N YGRDQ+L
Sbjct: 887 NLYGRDQQL 895


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,888
Number of Sequences: 438
Number of extensions: 1544
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6244050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)