Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_O13
         (514 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0339 - 19687749-19690805                                         30   1.3  
12_01_0513 + 4059586-4059620,4060155-4060365,4060470-4060724,406...    29   2.9  
06_01_0047 - 429838-429960,430413-430508,430589-430596,431088-43...    28   3.8  
01_06_0569 + 30313337-30313650,30314271-30314353,30314763-303148...    28   5.1  

>06_03_0339 - 19687749-19690805
          Length = 1018

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 411 STNKTVLPLLMMHGFGSSFLEFYDVIPYLIADSD 512
           ST+  V+PL+ + GF S F++  +  PY+I   D
Sbjct: 633 STSIIVMPLVKIKGFVSLFIQSKEASPYVIPQDD 666


>12_01_0513 +
           4059586-4059620,4060155-4060365,4060470-4060724,
           4060801-4060865,4061120-4061194,4061440-4061575,
           4061661-4061753,4061838-4061983,4062074-4062174,
           4062259-4062434,4063823-4063900,4063991-4064199,
           4064286-4064378,4064888-4064971,4065405-4065506,
           4065591-4065678,4065756-4065809,4065869-4066075,
           4066970-4067026,4067171-4067225,4067737-4067813,
           4067941-4068007,4068383-4068444,4068541-4068603,
           4068702-4068830
          Length = 905

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 20/82 (24%), Positives = 43/82 (52%)
 Frame = +3

Query: 138 KVNTTVRPFKITFEDEMIDDFMYRVKNFRFPAKPLEDTFQYGFNSNELKKWQLYLIKEYS 317
           K+  T+  +K+TFE+    +   R+ N ++P K LE    + +NS  + +  +   K+ +
Sbjct: 399 KMEYTLINYKVTFENLAYVEAKKRLVNGKYPEKILE----WNYNSEHMIRGLIIDKKKGN 454

Query: 318 FVKLAERVNQYNHFLINIQGLD 383
            +K    V+ YN+  ++  G++
Sbjct: 455 IIK----VDHYNNVKMSYHGMN 472


>06_01_0047 -
           429838-429960,430413-430508,430589-430596,431088-431141,
           431226-431274,431368-431466,431560-431639,431926-431989,
           432082-432255,432342-432965,433046-433189,433262-433372,
           433442-433498,433664-433798
          Length = 605

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 12/22 (54%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
 Frame = +3

Query: 279 LKKWQLYLIKEYS-FVKLAERV 341
           +K W+ Y+IK+YS F K++ERV
Sbjct: 378 IKVWKRYMIKDYSKFDKISERV 399


>01_06_0569 +
           30313337-30313650,30314271-30314353,30314763-30314876,
           30315876-30315938,30316289-30316380,30316464-30316544,
           30316629-30316727,30316795-30316933,30317017-30317165
          Length = 377

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +3

Query: 237 PLEDTFQYGFNS-NELKKWQLYLIKEY 314
           P  + + + FNS +ELK+W LY   EY
Sbjct: 143 PPSEKYIFNFNSKDELKRWHLYSDSEY 169


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,755,606
Number of Sequences: 37544
Number of extensions: 210152
Number of successful extensions: 579
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)