Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_O13
         (514 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33425| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_4308| Best HMM Match : Ldh_1_C (HMM E-Value=2.6e-31)                27   9.1  

>SB_33425| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 957

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = -1

Query: 169 ILKGLTVVLTLSISLAGPHHAFKSKLDNIEVLFEVTPLKL*NNNNIRQRTIFTFV 5
           +  G    +T ++SLA       S L N  V++   PLK  NN    + T  TFV
Sbjct: 528 VYMGAPPYITHALSLAMILIVITSLLGNSLVMYATRPLKTPNNRAFTRNTTRTFV 582


>SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1649

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -2

Query: 504 QLLDKVLHRRILRMSYQIRAS*EEVVLFC*SIPLELS 394
           +LL K  H+ +  +S Q+R   E+++  C  +PL L+
Sbjct: 371 ELLMKSAHKNLEELSQQVRRLVEDILKECDGLPLALA 407


>SB_4308| Best HMM Match : Ldh_1_C (HMM E-Value=2.6e-31)
          Length = 368

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +3

Query: 357 FLINIQGLDVHFLKVPAVS--TNKTVLPLL 440
           F+   +GLDV+ +K+P +   +  T+LPLL
Sbjct: 124 FVAEAKGLDVNNIKIPVIGGHSGVTILPLL 153


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,854,992
Number of Sequences: 59808
Number of extensions: 249075
Number of successful extensions: 477
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)