Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_O13
         (514 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64852-7|AAB04970.1|  452|Caenorhabditis elegans Hypothetical pr...   101   4e-22
Z74029-6|CAM84812.1|  457|Caenorhabditis elegans Hypothetical pr...    62   2e-10
U88311-4|AAB42344.1|  537|Caenorhabditis elegans Udp-glucuronosy...    30   0.85 
Z81111-2|CAB03266.1|  535|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AL031627-17|CAA20950.2|  344|Caenorhabditis elegans Hypothetical...    29   2.6  
AF038614-7|AAB92060.2|  664|Caenorhabditis elegans Hypothetical ...    29   2.6  
Z50795-2|CAA90663.1|  618|Caenorhabditis elegans Hypothetical pr...    27   7.9  
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-...    27   7.9  
AC024859-20|ABA00160.2|  322|Caenorhabditis elegans Hypothetical...    27   7.9  
AC006708-18|AAF60424.2|  450|Caenorhabditis elegans Hypothetical...    27   7.9  
AC006708-17|AAK68884.2|  435|Caenorhabditis elegans Hypothetical...    27   7.9  

>U64852-7|AAB04970.1|  452|Caenorhabditis elegans Hypothetical
           protein W01A11.1 protein.
          Length = 452

 Score =  101 bits (241), Expect = 4e-22
 Identities = 52/137 (37%), Positives = 76/137 (55%), Gaps = 2/137 (1%)
 Frame = +3

Query: 93  NFDLNAWWGPASDMDKVNTTVRPFKITFEDEMIDDFMYRVKNFRFPAKPLEDT--FQYGF 266
           N + N ++G        NT ++PFK+  E  +IDD  +R++N R     LED+  F YGF
Sbjct: 30  NVEENNYYGSGKAKPD-NTEIKPFKVNVEQSVIDDLKHRLQNARISHSVLEDSDDFYYGF 88

Query: 267 NSNELKKWQLYLIKEYSFVKLAERVNQYNHFLINIQGLDVHFLKVPAVSTNKTVLPLLMM 446
           NS +L K + Y + +Y + K    +NQ+  F   I+GL VHFL V    + K V P+L+ 
Sbjct: 89  NSKQLLKLRDYWLNKYDWRKQEATINQFPQFKTEIEGLQVHFLHVKPPKSYKNVKPILVA 148

Query: 447 HGFGSSFLEFYDVIPYL 497
           HG+  +  EFY  IP L
Sbjct: 149 HGWPGNVFEFYKFIPLL 165


>Z74029-6|CAM84812.1|  457|Caenorhabditis elegans Hypothetical
           protein C45B11.6 protein.
          Length = 457

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 40/135 (29%), Positives = 71/135 (52%), Gaps = 2/135 (1%)
 Frame = +3

Query: 99  DLNAWWGPASDMDKVNTTVRPFKITFEDEMIDDFMYRVKNFRFPAKPLEDTFQYGFNSNE 278
           D + +W    D +K + T+  F I  ++  + +F  ++++ RF    L DT  Y    NE
Sbjct: 34  DPDDYW-KLDDPEKDDDTIYSFTIDIKESEVSNFKEKLESERF-LPTLYDT-NYDNYLNE 90

Query: 279 LKKWQLYLIKEYSFVKLAERVNQYNHFLINIQGLDVHFLKV--PAVSTNKTVLPLLMMHG 452
           LK+    ++  +++ +    +N +  +   I+GL +HFL+V  P       V+PLL+ HG
Sbjct: 91  LKQ----VLLGFNWKQHQHFLNTFKQYKTEIEGLKIHFLRVSTPPKDKKSRVVPLLIFHG 146

Query: 453 FGSSFLEFYDVIPYL 497
           F  SF +F+ +IP L
Sbjct: 147 FPGSFWDFFKIIPIL 161


>U88311-4|AAB42344.1|  537|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein28 protein.
          Length = 537

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 230 GKAEIFNTIHEVIYHFIFESDLERSNSGIDFIHIARWSP 114
           G  E+  ++ +V + F +ESD      GI  IH ++W P
Sbjct: 324 GLLEVIKSMPDVTFIFKYESDEVSFADGISNIHFSKWVP 362


>Z81111-2|CAB03266.1|  535|Caenorhabditis elegans Hypothetical
           protein T01G5.2 protein.
          Length = 535

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 230 GKAEIFNTIHEVIYHFIFESDLERSNSGIDFIHIARWSP 114
           G  E F +   V + + +ESD     +GID I+ ++W P
Sbjct: 325 GLLEAFKSFPNVTFIWKYESDDHSFANGIDNIYFSKWVP 363


>AL031627-17|CAA20950.2|  344|Caenorhabditis elegans Hypothetical
           protein Y102A5C.28 protein.
          Length = 344

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 23/119 (19%), Positives = 52/119 (43%), Gaps = 7/119 (5%)
 Frame = +3

Query: 114 WGPASDMDKVNTTVRPFKITFEDEMIDDFMYRVKNFRFPAKPLEDTFQYGFNSNELKKWQ 293
           WGP +   +++  VRPF +   +  +D+  Y  + F      ++++ +Y      + +W 
Sbjct: 148 WGPLASFPEMDIVVRPFLLDELNMTVDEVAYTGRLF---YSTIDNSLRYSAILTGVLQW- 203

Query: 294 LYLIKEYSFVKLAERVNQYNHFLINIQGLDVHFLKVPAVSTN-------KTVLPLLMMH 449
             L     F+ +   +  Y H+   +Q  DV  +++  +          +  +PL++MH
Sbjct: 204 -VLTASSLFLVIFFGLRCYFHYGKLVQLTDVQSIRLRQLQNQLFLALVCQATVPLILMH 261


>AF038614-7|AAB92060.2|  664|Caenorhabditis elegans Hypothetical
           protein F15E6.9 protein.
          Length = 664

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/51 (29%), Positives = 29/51 (56%)
 Frame = -3

Query: 314 VFLNQIELPFFQFIRVETILKGILQRFRGKAEIFNTIHEVIYHFIFESDLE 162
           + ++ I L F +  +V+  L  ILQ F   A+IF+ + ++  +F F++  E
Sbjct: 340 LLVDDIHLNFCENFKVKITLSQILQNFNCFAQIFSLLKQIFINF-FQASKE 389


>Z50795-2|CAA90663.1|  618|Caenorhabditis elegans Hypothetical
           protein R166.2 protein.
          Length = 618

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = +3

Query: 105 NAWWGPASDMDKVNTTVRPFKITFEDEMIDDFMYRV 212
           N WW   +D   +N TV+   +T     +  F Y++
Sbjct: 256 NNWWNLGADYQPINETVKDLNLTITYYPMSVFKYQM 291


>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
            x-hybridizingprotein 1, isoform a protein.
          Length = 1876

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 135  DKVN-TTVRPFKITFEDEMIDDFMYRVKNFR 224
            D VN  T   +K  FE++++  F +++KNF+
Sbjct: 1513 DAVNGKTFSDYKKLFENDVLKSFKFKIKNFK 1543


>AC024859-20|ABA00160.2|  322|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.24 protein.
          Length = 322

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +3

Query: 87  LSNFDLNAWWGPASDMDKVNTTVRP-FKITFEDEMIDDFMY 206
           L N + N  W    D + + TT  P +K+  EDE  ++F+Y
Sbjct: 282 LLNVEDNGEWRTPRDFNWLATTPSPNWKVVPEDEWTEEFIY 322


>AC006708-18|AAF60424.2|  450|Caenorhabditis elegans Hypothetical
           protein Y110A7A.6a protein.
          Length = 450

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/42 (28%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +3

Query: 126 SDMDKVNTTVRPFK-ITFEDEMIDDFMYRVKNFRFPAKPLED 248
           S++ +V      +K I  ++E  +DF+ R++N+R   +PL++
Sbjct: 163 SNITEVKINSPDYKGIMSQEEAKEDFLKRIENYRMQYEPLDE 204


>AC006708-17|AAK68884.2|  435|Caenorhabditis elegans Hypothetical
           protein Y110A7A.6b protein.
          Length = 435

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/42 (28%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +3

Query: 126 SDMDKVNTTVRPFK-ITFEDEMIDDFMYRVKNFRFPAKPLED 248
           S++ +V      +K I  ++E  +DF+ R++N+R   +PL++
Sbjct: 169 SNITEVKINSPDYKGIMSQEEAKEDFLKRIENYRMQYEPLDE 210


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,749,648
Number of Sequences: 27780
Number of extensions: 209806
Number of successful extensions: 599
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)