Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_O13
         (514 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g10840.1 68416.m01305 hydrolase, alpha/beta fold family prote...    29   2.4  
At5g58040.1 68418.m07263 fip1 motif-containing protein contains ...    28   3.2  
At5g43530.1 68418.m05322 SNF2 domain-containing protein / helica...    28   4.2  
At5g18700.1 68418.m02219 protein kinase-related contains protein...    28   4.2  
At5g58520.1 68418.m07328 protein kinase family protein contains ...    27   9.8  

>At3g10840.1 68416.m01305 hydrolase, alpha/beta fold family protein
           low similarity to hydrolase [Terrabacter sp. DBF63]
           GI:14196240; contains Pfam profile: PF00561 alpha/beta
           hydrolase fold
          Length = 466

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 381 DVHFLKVPAVSTNKTVLPLLMMHGFGSSFLEFYDVI 488
           DV      A  T KT  P++++HGFG+S   +  V+
Sbjct: 115 DVSNTSPHAQETPKTKFPMILLHGFGASVFSWNRVM 150


>At5g58040.1 68418.m07263 fip1 motif-containing protein contains
           Pfam profile PF05182: Fip1 motif
          Length = 1192

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 26/108 (24%), Positives = 43/108 (39%)
 Frame = +3

Query: 114 WGPASDMDKVNTTVRPFKITFEDEMIDDFMYRVKNFRFPAKPLEDTFQYGFNSNELKKWQ 293
           WG  +    ++ T+   K  FE + ID F    K +R+P   + D F +G N    K + 
Sbjct: 316 WGSNTAGRGLDFTLPSHKTIFEVD-IDSF--EEKPWRYPGVEMTDYFNFGLNEESWKDYC 372

Query: 294 LYLIKEYSFVKLAERVNQYNHFLINIQGLDVHFLKVPAVSTNKTVLPL 437
             L +      +  R+  Y     + QG D       A +T    +P+
Sbjct: 373 KQLDQHRIQTTMQSRIRVYESGRTD-QGYDPDLPPELAAATGAQGVPV 419


>At5g43530.1 68418.m05322 SNF2 domain-containing protein / helicase
            domain-containing protein / RING finger domain-containing
            protein similar to SP|P36607 DNA repair protein rad8
            {Schizosaccharomyces pombe}; contains Pfam profiles
            PF00271: Helicase conserved C-terminal domain, PF00176:
            SNF2 family N-terminal domain, PF00097: Zinc finger,
            C3HC4 type (RING finger)
          Length = 1277

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 33   ILLLFYSFNGVTSNNTSILSNFDLNAWWGPA 125
            ILL+     GV  N T+  S F ++ WW PA
Sbjct: 1181 ILLMSLKAGGVGLNLTAASSVFLMDPWWNPA 1211


>At5g18700.1 68418.m02219 protein kinase-related contains protein
           kinase domain, INTERPRO:IPR000719
          Length = 1366

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -3

Query: 239 RFRGKAEIFNTIHEVIYHFIFESDLERSNSGIDFIHIARWSPPCVQVEI 93
           RF  +  I N  +  IY    + +  R  +G   + +AR++PPC+Q  +
Sbjct: 741 RFSSQDLISNLCY--IYKATGKQESMRQTAGSCLVRLARFNPPCIQTVV 787


>At5g58520.1 68418.m07328 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 604

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 163 KGLTVVLTLSISLAGPHHAFKSKLDN 86
           KGLT+ + L +  +G H  FK++++N
Sbjct: 229 KGLTLGVVLLLDQSGQHSLFKTRVEN 254


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,051,493
Number of Sequences: 28952
Number of extensions: 191383
Number of successful extensions: 482
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)