Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_O11
         (614 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   1.5  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    22   3.6  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   8.2  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    21   8.2  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 143 PFFNIAGGTSETINQNIDTW 202
           PF +I GG S +  Q  D W
Sbjct: 87  PFSSIGGGISASKRQRTDDW 106


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -2

Query: 613 KFTTTFPXTVPHEYSFIRVLV 551
           K+TT F  T PH ++F    V
Sbjct: 345 KYTTYFLNTYPHLFNFFEFSV 365


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 162 EEPQKPSIKTSIPGPKSQKLMQELSAIQQAG 254
           +E ++PS K+  P   S  +      +QQAG
Sbjct: 44  DEEERPSFKSRKPKNYSAPIGFVAGGVQQAG 74


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +1

Query: 265 FSPIMISPSAI 297
           F+P MI+PSAI
Sbjct: 189 FAPTMINPSAI 199


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,486
Number of Sequences: 336
Number of extensions: 2888
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15666150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)