Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_O11
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch...    89   6e-19
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha...    30   0.31 
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p...    27   2.8  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    26   5.0  
SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated |Schizosaccharom...    26   5.0  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    25   6.6  
SPBC29A3.21 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.6  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   8.7  

>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 474

 Score = 88.6 bits (210), Expect = 6e-19
 Identities = 41/75 (54%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
 Frame = +3

Query: 165 EPQKPSIKT-SIPGPKSQKLMQELSAIQQAGAVQLFADYDKSIGNYFVDADGNEFLDAFT 341
           EPQ PSIKT +IPGPK +   +E+S      AV+   DY+KSIGNY VD DGN  LD ++
Sbjct: 17  EPQGPSIKTETIPGPKGKAAAEEMSKYHDISAVKFPVDYEKSIGNYLVDLDGNVLLDVYS 76

Query: 342 QISSQPVGYNHPELL 386
           QI++ P+GYN+P LL
Sbjct: 77  QIATIPIGYNNPTLL 91



 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = +2

Query: 410 ILKLWVNRPALGVFPSADWPEKLKNVLLSVAPEQFNSVVTMMCGSCANENAYKAVFM 580
           +  + +NRPALG +P  +W        +  AP+    V   M GS ANE AYK   +
Sbjct: 99  VATILMNRPALGNYPPKEWARVAYEGAIKYAPKGQKYVYFQMSGSDANEIAYKLAML 155


>SPCC777.09c |arg1||acetylornithine
           aminotransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 441

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = +3

Query: 249 AGAVQLFADYD----KSIGNYFVDADGNEFLDAFTQISSQPVGYNHPEL 383
           A  + ++A Y     K  G+Y  D +G +++D  + ++   +G+ HPE+
Sbjct: 45  ANIISVYARYPVVAAKGEGSYLFDKEGRKYIDFTSGVAVTSLGHAHPEV 93


>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 438

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 276 YDKSIGNYFVDADGNEFLDAFTQISSQPVGYNHPELL 386
           + K+ G    D +G E+LD  +  S+   G+ HP+++
Sbjct: 35  FSKAKGAKVWDPEGREYLDFLSAYSAVNQGHCHPKII 71


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +3

Query: 69  SKMMSKMIMQRIKLVLPSTFKGSRCLSSILLEEPQKPSIKTSIPG 203
           S  M K++++  KL  P  F  +   SSIL +E +K  I    PG
Sbjct: 826 SDSMYKLLLRFGKLDNPMVFSTANRSSSILSQENEKLYINHKAPG 870


>SPAC1783.03 |fta2|sma2|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 351

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 235 PQFSKPALSSFSPIMISPSAIILLMRMVMSF*THSHKFLHSPW 363
           P F++  LSSFS   I    I+ L+R    F  H + +  + W
Sbjct: 209 PHFARKELSSFSDSAIQCLDIVALLRAFSLF-AHHYSYRCNTW 250


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -3

Query: 471 SGQSAEGNTPRAGRLTQSFKIILIFQTRLAIPDDYSPR 358
           S +  +G+T +AG+  +  + +  +     IP+DYSP+
Sbjct: 473 SSEPNQGDTRKAGKRLKYSRNLDDYHICTQIPEDYSPK 510


>SPBC29A3.21 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 100

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 130 KVQGAFLQYCWRNLRNHQSKHRYLDLN 210
           K   A + YC R L +   KH Y++LN
Sbjct: 48  KSYSASIDYCQRFLFSSNLKHNYVNLN 74


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 495  QWPQNNSIVLSL*CVGLALTRTRIKLYSCGTVXGNVVVN 611
            QW Q  ++ LSL    L  T  R+   SC  +  N++ N
Sbjct: 1199 QWSQVRALALSLLSDSLNSTSYRLLGISCSDMVSNILSN 1237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,432,254
Number of Sequences: 5004
Number of extensions: 47807
Number of successful extensions: 126
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)