Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_O11
(614 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0699 - 6163662-6163680,6163865-6163943,6163979-6164048,616... 33 0.24
08_01_0126 - 1008469-1008477,1009055-1009396,1009499-1010167,101... 32 0.42
05_05_0202 - 23211342-23211385,23211493-23211579,23211666-232117... 31 0.55
03_05_0467 - 24615243-24615384,24619166-24619450,24619516-246195... 31 0.55
11_01_0469 + 3638493-3641166,3641286-3641653 29 2.9
06_03_1221 - 28514952-28518152 29 2.9
06_03_1220 - 28505306-28508497 29 2.9
02_04_0219 + 21007875-21008253,21009774-21009811,21009948-210099... 29 2.9
06_03_1219 - 28491185-28494415 29 3.9
06_03_1217 - 28484007-28487237 28 5.1
04_04_1143 + 31202901-31203034,31203312-31203345,31203913-312039... 28 5.1
03_02_0936 - 12528336-12528379,12528516-12528602,12528696-125288... 28 5.1
03_01_0125 + 977572-977879,978155-978275,979673-979846,979985-98... 28 5.1
03_01_0061 + 490037-490045,490121-490302,490551-490671,491933-49... 28 5.1
08_02_1477 - 27375872-27376723,27376825-27377091 27 8.9
08_02_1383 + 26594304-26594386,26595927-26595972,26596108-265962... 27 8.9
>08_01_0699 -
6163662-6163680,6163865-6163943,6163979-6164048,
6164151-6164266,6164656-6164734,6164831-6164921,
6165006-6165084,6165161-6165248,6165371-6165454,
6165544-6165591,6166118-6166192,6166286-6166362,
6166460-6166548,6166711-6166749,6167133-6167206,
6167496-6167588,6167820-6167917,6168100-6168172,
6168322-6168406,6168513-6168634,6169307-6169414,
6169537-6169608
Length = 585
Score = 32.7 bits (71), Expect = 0.24
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 279 DKSIGNYFVDADGNEFLDAFTQISSQPVGYNHPELL 386
D+S G+Y D +G +++DA + S +G N P L+
Sbjct: 126 DRSEGSYVYDINGKKYIDALAGLWSTALGGNEPRLI 161
>08_01_0126 -
1008469-1008477,1009055-1009396,1009499-1010167,
1010264-1010446,1010491-1010550,1010551-1010649
Length = 453
Score = 31.9 bits (69), Expect = 0.42
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 255 AVQLFADYDKSIGNYFVDADGNEFLDAF 338
AVQ+ AD D SI ++ +DG F+D F
Sbjct: 66 AVQVLADLDLSINKAYISSDGRWFMDVF 93
>05_05_0202 -
23211342-23211385,23211493-23211579,23211666-23211779,
23211886-23212111,23212222-23212401,23212511-23212654,
23212818-23212979,23213093-23213296,23214109-23214156,
23214601-23214846
Length = 484
Score = 31.5 bits (68), Expect = 0.55
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3
Query: 267 FADYDKSIGNYFVDADGNEFLDAFTQISSQPVGYNHPELL 386
+ DY K Y D DG +LDAF I++ G+ HP+++
Sbjct: 93 YRDYHK----YLFDEDGRRYLDAFGGIATVCCGHCHPDVV 128
>03_05_0467 -
24615243-24615384,24619166-24619450,24619516-24619596,
24619807-24619904,24620038-24620190,24620705-24620760,
24620844-24621003,24621416-24621646,24621795-24621903,
24622642-24622799
Length = 490
Score = 31.5 bits (68), Expect = 0.55
Identities = 11/37 (29%), Positives = 24/37 (64%)
Frame = +3
Query: 276 YDKSIGNYFVDADGNEFLDAFTQISSQPVGYNHPELL 386
+ K G++ +D +GN+++D + S+ G+ HP++L
Sbjct: 61 FSKGEGSHILDPEGNKYIDFLSAYSAVNQGHCHPKVL 97
>11_01_0469 + 3638493-3641166,3641286-3641653
Length = 1013
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = +2
Query: 419 LWVNRPAL-GVFPSADWPEKLKNVLLSV 499
LWV+R L G FP ADWP L+ + LS+
Sbjct: 149 LWVHRNNLTGQFP-ADWPPNLQQLQLSI 175
>06_03_1221 - 28514952-28518152
Length = 1066
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 443 GVFPSADWPEKLKNVLLSVAPEQFNSVVTMMCGSC 547
G FPSA W + V L+ + F+ + +C SC
Sbjct: 168 GRFPSAIWEHTPRLVSLNASNNSFHGSIPSLCASC 202
>06_03_1220 - 28505306-28508497
Length = 1063
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 443 GVFPSADWPEKLKNVLLSVAPEQFNSVVTMMCGSC 547
G FPSA W + V L+ + F+ + +C SC
Sbjct: 162 GQFPSAIWEHTPRLVSLNASNNSFHGTIPSLCVSC 196
>02_04_0219 +
21007875-21008253,21009774-21009811,21009948-21009976,
21010398-21010443,21010567-21010681,21010790-21010857,
21011780-21011974,21012180-21012281,21012889-21013119,
21013514-21013684
Length = 457
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +3
Query: 258 VQLFADYDKSIGNYFVDADGNEFLDAFTQISSQ 356
VQ+ +D D +I ++ +DG F+D F + Q
Sbjct: 178 VQVLSDLDLAISKAYITSDGGWFMDVFHVVDKQ 210
>06_03_1219 - 28491185-28494415
Length = 1076
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 443 GVFPSADWPEKLKNVLLSVAPEQFNSVVTMMCGSC 547
G FPSA W + V L+ + F + +C SC
Sbjct: 166 GQFPSAIWEHTPRLVSLNASNNSFRGTIPSLCVSC 200
>06_03_1217 - 28484007-28487237
Length = 1076
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 443 GVFPSADWPEKLKNVLLSVAPEQFNSVVTMMCGSC 547
G FPSA W + V L+ + F+ + +C SC
Sbjct: 170 GQFPSAIWEHTPRLVSLNASNNSFHGSIPSLCVSC 204
>04_04_1143 +
31202901-31203034,31203312-31203345,31203913-31203985,
31204090-31204187,31204356-31204448,31205081-31205154,
31205680-31205768,31205859-31205935,31206016-31206090,
31206438-31206485,31206571-31206654,31206734-31206821,
31206896-31206974,31207072-31207162,31207724-31207802,
31208219-31208334,31208430-31208488,31210292-31210342,
31211418-31211444,31211725-31211809,31211952-31212024,
31212154-31212251,31212385-31212477,31212972-31213045,
31213258-31213296,31213410-31213498,31213583-31213707,
31213750-31213824,31214225-31214272,31214359-31214442,
31214574-31214661,31214762-31214840,31214930-31215020,
31215113-31215191,31215485-31215600,31215910-31215987
Length = 960
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 279 DKSIGNYFVDADGNEFLDAFTQISSQPVGYNHPELL 386
++S G+Y D DG ++LD+ + +G + P L+
Sbjct: 515 ERSEGSYVYDIDGKKYLDSLAGLWCTALGGSEPRLV 550
>03_02_0936 -
12528336-12528379,12528516-12528602,12528696-12528809,
12528895-12529120,12529200-12529523,12529603-12529773,
12529870-12530100,12530291-12530479,12531176-12531178
Length = 462
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 297 YFVDADGNEFLDAFTQISSQPVGYNHPELL 386
Y D G +LDAF I++ G+ HP+++
Sbjct: 74 YLFDERGRRYLDAFAGIATVCCGHCHPDVV 103
>03_01_0125 +
977572-977879,978155-978275,979673-979846,979985-980148,
980245-980332,980426-980479,980571-980651,980895-981068
Length = 387
Score = 28.3 bits (60), Expect = 5.1
Identities = 20/53 (37%), Positives = 29/53 (54%)
Frame = +1
Query: 196 YLDLNHKN*CKSCPQFSKPALSSFSPIMISPSAIILLMRMVMSF*THSHKFLH 354
YLDL+ K SCP+F+K +P +I S + ++R V HSH+ LH
Sbjct: 120 YLDLDLKKFMDSCPEFAK------NPTLIK-SYLYQILRGVAY--CHSHRVLH 163
>03_01_0061 +
490037-490045,490121-490302,490551-490671,491933-492106,
492246-492409,492506-492593,492687-492740,492837-492917,
493075-493083
Length = 293
Score = 28.3 bits (60), Expect = 5.1
Identities = 20/53 (37%), Positives = 29/53 (54%)
Frame = +1
Query: 196 YLDLNHKN*CKSCPQFSKPALSSFSPIMISPSAIILLMRMVMSF*THSHKFLH 354
YLDL+ K SCP+F+K +P +I S + ++R V HSH+ LH
Sbjct: 81 YLDLDLKKFMDSCPEFAK------NPTLIK-SYLYQILRGVAY--CHSHRVLH 124
>08_02_1477 - 27375872-27376723,27376825-27377091
Length = 372
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 513 NCSGATDNNTFFNFSGQSAEGNTP 442
N S A NN N SG+SAE TP
Sbjct: 235 NASSAAGNNNNNNCSGESAEAATP 258
>08_02_1383 +
26594304-26594386,26595927-26595972,26596108-26596222,
26596645-26596712,26596814-26597440,26597527-26597631,
26597715-26598062
Length = 463
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 255 AVQLFADYDKSIGNYFVDADGNEFLDAF 338
AVQ+ D + I ++ +DGN F+D F
Sbjct: 56 AVQVLVDLNLVITKAYISSDGNWFMDVF 83
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,573,533
Number of Sequences: 37544
Number of extensions: 299591
Number of successful extensions: 850
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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