Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_O11
         (614 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40870| Best HMM Match : No HMM Matches (HMM E-Value=.)              72   3e-13
SB_22725| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)                 28   6.9  
SB_42991| Best HMM Match : fn3 (HMM E-Value=7.2e-08)                   28   6.9  
SB_24642| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_40870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 72.1 bits (169), Expect = 3e-13
 Identities = 36/81 (44%), Positives = 52/81 (64%)
 Frame = +3

Query: 144 LSSILLEEPQKPSIKTSIPGPKSQKLMQELSAIQQAGAVQLFADYDKSIGNYFVDADGNE 323
           ++S  ++E +   ++TS+PGPKSQ           +  ++ F D++KS GNY VDADGN 
Sbjct: 116 VASFNIDEYEGIDMRTSVPGPKSQS----------SKGMKYFVDFEKSKGNYVVDADGNV 165

Query: 324 FLDAFTQISSQPVGYNHPELL 386
            LD + QI+S P+GYNHP LL
Sbjct: 166 MLDVYQQIASIPLGYNHPALL 186



 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 18/31 (58%), Positives = 22/31 (70%)
 Frame = +2

Query: 497 VAPEQFNSVVTMMCGSCANENAYKAVFMWYR 589
           V+P+    V TM CG+CANENA KA  +WYR
Sbjct: 196 VSPKGLTEVTTMACGTCANENAIKAACIWYR 226


>SB_22725| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 59

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = -3

Query: 606 PPRSLXRYHMNTALYAFSLAQDPHIIVTTLLNCSGATDNNTFFNFSGQ 463
           PP  L RY   T LY   L +  + +VT+    SGA D      FS +
Sbjct: 7   PP--LSRYQGKTTLYLMRLGKQGYTVVTSSFQESGAIDQWYGLRFSSK 52


>SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)
          Length = 1421

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = -2

Query: 316 PSASTK*LPMDLS*SAKSWTAPAC*IADNSCINF 215
           PS STK    ++S S ++W APA   AD+ C+++
Sbjct: 461 PSPSTK---TEISDSRRAWPAPAQYYADSRCVSW 491


>SB_42991| Best HMM Match : fn3 (HMM E-Value=7.2e-08)
          Length = 769

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 18/38 (47%), Positives = 19/38 (50%)
 Frame = +3

Query: 258 VQLFADYDKSIGNYFVDADGNEFLDAFTQISSQPVGYN 371
           V LF+ Y K IGN  V  D N FL   T     PVG N
Sbjct: 468 VHLFSRYRKVIGNKCVGGDSNFFLPKKTPC---PVGEN 502


>SB_24642| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 254

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 183 IKTSIPGPKSQKLMQELSAIQQAGAVQLFADYDKSIGNYFVDADGN 320
           ++T + GP +    +E      AG + + A++DKS    F+D  GN
Sbjct: 209 VQTDMGGPNALTATEE----SVAGMMSVLANFDKSKNGMFIDFRGN 250


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,237,402
Number of Sequences: 59808
Number of extensions: 356162
Number of successful extensions: 968
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)