Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_O11
         (614 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69664-4|CAA93517.1|  483|Caenorhabditis elegans Hypothetical pr...   107   6e-24
U97405-5|AAB53010.3|  444|Caenorhabditis elegans Hypothetical pr...    28   6.1  
U58757-5|AAC47919.3|  555|Caenorhabditis elegans Hypothetical pr...    28   6.1  

>Z69664-4|CAA93517.1|  483|Caenorhabditis elegans Hypothetical
           protein K04D7.3 protein.
          Length = 483

 Score =  107 bits (257), Expect = 6e-24
 Identities = 50/94 (53%), Positives = 64/94 (68%)
 Frame = +3

Query: 105 KLVLPSTFKGSRCLSSILLEEPQKPSIKTSIPGPKSQKLMQELSAIQQAGAVQLFADYDK 284
           +L   S  +  R +S+I   EP  PSI TSIPGPKS+ L QE+  + Q  +V+   DY+K
Sbjct: 4   RLAKSSLIQQVRGVSAIANAEPSGPSISTSIPGPKSKALKQEMDKVHQTTSVRFHVDYEK 63

Query: 285 SIGNYFVDADGNEFLDAFTQISSQPVGYNHPELL 386
           S GNY VDADGN  LD +TQISS P+GYNHP+L+
Sbjct: 64  SFGNYVVDADGNALLDVYTQISSLPLGYNHPDLV 97



 Score = 73.7 bits (173), Expect = 9e-14
 Identities = 30/61 (49%), Positives = 43/61 (70%)
 Frame = +2

Query: 425 VNRPALGVFPSADWPEKLKNVLLSVAPEQFNSVVTMMCGSCANENAYKAVFMWYRXRERG 604
           V+RPALG FP  D+ + + + L S+AP+   +V TM+CG+ ANENA K  F+WY+ + RG
Sbjct: 110 VSRPALGSFPRTDFADGISHALTSIAPKGLKAVQTMLCGTSANENAIKTAFIWYQAQRRG 169

Query: 605 G 607
           G
Sbjct: 170 G 170


>U97405-5|AAB53010.3|  444|Caenorhabditis elegans Hypothetical
           protein T09B4.8 protein.
          Length = 444

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = +3

Query: 222 MQELSAIQQAGAVQLFADY---DKSIGNYFVDADGNEFLDAFTQISSQPVGYNHPEL 383
           +Q L  +   G V  + D     K    +  D++G ++LD F  I +  VG+ HP++
Sbjct: 4   VQALRPLLPKGHVTYYKDQLLITKGEKQFLFDSNGKKYLDFFGGIVTVSVGHCHPKI 60


>U58757-5|AAC47919.3|  555|Caenorhabditis elegans Hypothetical
           protein C01B10.9 protein.
          Length = 555

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 255 AVQLFADYDKSIGNYFVDADGNEFLDAFTQISSQPV 362
           A  LF +    +GNYF DAD  +  D F     + V
Sbjct: 76  ATGLFEEEHGIVGNYFFDADTKKAFDYFNSTGKEGV 111


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,428,801
Number of Sequences: 27780
Number of extensions: 267053
Number of successful extensions: 709
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)