Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_O10
         (484 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr 2|...   116   2e-27
SPCC1223.12c |meu10||GPI anchored cell surface protein |Schizosa...    32   0.052
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    26   2.6  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    26   3.4  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    25   4.5  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    25   6.0  
SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch...    25   6.0  

>SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 209

 Score =  116 bits (279), Expect = 2e-27
 Identities = 52/106 (49%), Positives = 78/106 (73%), Gaps = 1/106 (0%)
 Frame = +2

Query: 170 LPLAATMQEDEQSGCNVLEYQNQAKMLFRKLGPQSPMRCSIETGPYLFHYLIENEICYLV 349
           LPLAA++ +DE +  N+  ++ QAK++ ++L P S  R SIE+G Y FHYLI+N ICYL 
Sbjct: 7   LPLAASV-DDESTERNLESHKKQAKLILKRLSPTSEKRASIESGDYTFHYLIDNGICYLC 65

Query: 350 LCERNYSKRLAFSYLEEIAQEFYQQYGKR-VNTVTRPYTFIEFDTW 484
           +CE++Y ++LAFSYLEE+A EF+  +G+  +    RPY F++FDT+
Sbjct: 66  ICEQSYPRKLAFSYLEELAGEFWNSFGEEALQPGLRPYAFVQFDTF 111


>SPCC1223.12c |meu10||GPI anchored cell surface protein
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 416

 Score = 31.9 bits (69), Expect = 0.052
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 344 LVLCERNYSKRLAFSYLEEIAQEFYQQYGKRVNTVTRP 457
           +V+   NY + +   YLE +  +FY  Y  R  +VT P
Sbjct: 165 MVIVNNNYLREVDMPYLESVESKFYVSYNAREISVTLP 202


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -3

Query: 383 MQVSCCNSFHTVLNSRSHFQLNNGRDMVLFLWNSASETG 267
           M V  C S   V ++R  F + NG  M+L+   SA E G
Sbjct: 685 MDVLSCKSV-PVQDNRQVFMVRNGEPMILYPEESAYEMG 722


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 326 ENEICYLVLCERNYSKRLAFSYLEEIAQEFY 418
           E+  C L+L E + +K LA S L  + +++Y
Sbjct: 495 ESHKCVLILTEGDSAKSLAVSGLSVVGRDYY 525


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 311 FHYLIENEICYLVLCERNYSKRLAFSYLEEIAQEFYQQYGKRV 439
           FHY+ E  IC++      YS   AF   + +A+E    +G+R+
Sbjct: 437 FHYIPEKHICFVTFI--TYSAANAFH--DYLAEEEVLLHGRRI 475


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 386 SYLEEIAQEFYQQYGKRVNTVTRPYTF 466
           +Y + +  E  +QY   VN+ TRP  F
Sbjct: 554 NYFKSLKAELNRQYAAAVNSGTRPLLF 580


>SPBC365.02c |cox10||protoheme IX
           farnesyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 153 RGSSTACLWLRPCKK 197
           +GSS +C++ RPC K
Sbjct: 7   KGSSKSCIYTRPCLK 21


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,952,130
Number of Sequences: 5004
Number of extensions: 38160
Number of successful extensions: 90
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)