Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_O10
(484 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0945 - 7439776-7440026,7440109-7440269,7440824-7441011 122 1e-28
03_06_0257 - 32697469-32697520,32698183-32698301,32698536-326985... 118 2e-27
08_02_0127 + 12840738-12840913,12841475-12841635,12842123-128422... 105 2e-23
06_01_0688 - 5022703-5022805,5023615-5023694,5024305-5024381,502... 58 3e-09
10_01_0303 - 3337454-3337544,3338358-3338521,3338624-3338805,333... 38 0.004
07_01_0987 + 8320205-8320472,8321549-8321690,8321773-8321893,832... 35 0.030
01_07_0284 - 42472309-42472359,42472778-42472864,42473384-424734... 34 0.052
06_01_0521 - 3773749-3773931,3774295-3774485,3775115-3775334 31 0.37
03_06_0347 + 33293915-33294104,33295143-33295284,33295365-332954... 31 0.48
11_06_0030 - 19415263-19415388,19415649-19415728,19416196-194162... 29 1.5
01_05_0201 - 19225597-19225890,19227832-19228030,19228133-192283... 29 2.0
02_05_1125 + 34282559-34282796,34283247-34283437,34283540-342836... 28 3.4
>01_01_0945 - 7439776-7440026,7440109-7440269,7440824-7441011
Length = 199
Score = 122 bits (295), Expect = 1e-28
Identities = 59/120 (49%), Positives = 80/120 (66%), Gaps = 2/120 (1%)
Frame = +2
Query: 131 MVLMTMIARVVDGLPLAATMQEDEQSGCNVLEYQNQAKMLFRKL--GPQSPMRCSIETGP 304
MV +TMIARV D LPL + +D + + Y+ QAK+LF+ L G R SIETGP
Sbjct: 1 MVKLTMIARVTDDLPLVEGL-DDGRDLKDADFYKQQAKLLFKNLSKGQHEASRMSIETGP 59
Query: 305 YLFHYLIENEICYLVLCERNYSKRLAFSYLEEIAQEFYQQYGKRVNTVTRPYTFIEFDTW 484
YLFHY+IE +CYL +C+ +Y K+LAF YLE++ EF + G ++ T RPY FI+FDT+
Sbjct: 60 YLFHYIIEGRVCYLTMCDCSYPKKLAFQYLEDLKNEFERVNGNQIETAARPYAFIKFDTF 119
>03_06_0257 -
32697469-32697520,32698183-32698301,32698536-32698556,
32698903-32698979,32699331-32699477,32699561-32699721,
32700320-32700522
Length = 259
Score = 118 bits (284), Expect = 2e-27
Identities = 59/125 (47%), Positives = 81/125 (64%), Gaps = 7/125 (5%)
Frame = +2
Query: 131 MVLMTMIARVVDGLPLAATMQEDEQSGCNVLEYQNQAKMLFRKL--GPQSPMRCSIETGP 304
MV +TM+ARV DGLPLA + +D + + Y+ QAK+LF+ L G R SIETGP
Sbjct: 1 MVKLTMVARVTDGLPLAEGL-DDGRDQKDADFYKQQAKLLFKNLSKGQHEASRMSIETGP 59
Query: 305 YLFHY-----LIENEICYLVLCERNYSKRLAFSYLEEIAQEFYQQYGKRVNTVTRPYTFI 469
Y F Y +IE +CYL +C+R+Y K+LAF YLE++ EF + G ++ T RPY FI
Sbjct: 60 YFFQYPYVLYIIEGRVCYLTMCDRSYPKKLAFQYLEDLKNEFERVNGSQIETAARPYAFI 119
Query: 470 EFDTW 484
+FDT+
Sbjct: 120 KFDTF 124
>08_02_0127 +
12840738-12840913,12841475-12841635,12842123-12842202,
12842435-12842550,12842570-12842705,12842738-12842872
Length = 267
Score = 105 bits (251), Expect = 2e-23
Identities = 54/117 (46%), Positives = 74/117 (63%), Gaps = 2/117 (1%)
Frame = +2
Query: 131 MVLMTMIARVVDGLPLAATMQEDEQSGCNVLEYQNQAKMLFRKL--GPQSPMRCSIETGP 304
MV +TMIARV DGLPL + +D + + Y+ QAK+LF+ L G R SIETGP
Sbjct: 1 MVKLTMIARVTDGLPLVEGL-DDGRDLKDADFYKQQAKLLFKNLSKGQHEASRMSIETGP 59
Query: 305 YLFHYLIENEICYLVLCERNYSKRLAFSYLEEIAQEFYQQYGKRVNTVTRPYTFIEF 475
Y+ IE +CYL +C+ +Y K+LAF YLE++ EF + G ++ T RPY FI+F
Sbjct: 60 YI----IEGRVCYLTMCDHSYPKKLAFQYLEDLKNEFERVNGNQIETAARPYAFIKF 112
>06_01_0688 -
5022703-5022805,5023615-5023694,5024305-5024381,
5024670-5024816,5025654-5025876
Length = 209
Score = 58.4 bits (135), Expect = 3e-09
Identities = 33/65 (50%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Frame = +2
Query: 131 MVLMTMIARVVDGLPLAATMQEDEQSGCNVLEYQNQAKMLFRKL--GPQSPMRCSIETGP 304
MV +TMIARV DGLPLA + +D + + Y+ QAK+LF+ L G R SIETGP
Sbjct: 1 MVKLTMIARVTDGLPLAEGL-DDGRDQKDADFYKQQAKLLFKNLSKGQHEASRMSIETGP 59
Query: 305 YLFHY 319
Y F Y
Sbjct: 60 YYFQY 64
>10_01_0303 -
3337454-3337544,3338358-3338521,3338624-3338805,
3339088-3339322
Length = 223
Score = 37.9 bits (84), Expect = 0.004
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Frame = +2
Query: 239 AKMLFRKLGPQSPMRCSIETGPYLFHYL------IENEICYLVLCERNYSKRLAFSYLEE 400
A+ + KL P + R Y+FH L + + +L + + +R+ F YLE+
Sbjct: 29 ARRILEKLPPDAESRLCFAQDRYIFHVLRSPPPAAADGLTFLCMANDTFGRRIPFLYLED 88
Query: 401 IAQEFYQQYGK 433
I F + YG+
Sbjct: 89 IQMRFIKNYGR 99
>07_01_0987 +
8320205-8320472,8321549-8321690,8321773-8321893,
8322190-8322264,8322784-8322846,8322934-8323086
Length = 273
Score = 35.1 bits (77), Expect = 0.030
Identities = 14/56 (25%), Positives = 30/56 (53%)
Frame = +2
Query: 263 GPQSPMRCSIETGPYLFHYLIENEICYLVLCERNYSKRLAFSYLEEIAQEFYQQYG 430
G +P R S + F++L+ Y V+ + + K ++ ++LE + +F ++YG
Sbjct: 65 GGGAPARFSYACDGHTFNFLLHRGYAYCVVAKESVPKNVSVAFLERLKDDFMKRYG 120
>01_07_0284 -
42472309-42472359,42472778-42472864,42473384-42473449,
42474608-42474712,42475129-42475200,42475421-42475543
Length = 167
Score = 34.3 bits (75), Expect = 0.052
Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Frame = +2
Query: 326 ENEICYLVLCERNYSKRLAFSYLEEIAQEFYQQYGKRVNTV----TRPYTFIE 472
+N +C + + +Y R AFS L + +E+++ +G+R T T+P+ +++
Sbjct: 41 DNGLCAIAFTDDHYPVRSAFSLLNTVLEEYHKTFGERWRTAKTDNTQPWQYLD 93
>06_01_0521 - 3773749-3773931,3774295-3774485,3775115-3775334
Length = 197
Score = 31.5 bits (68), Expect = 0.37
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +2
Query: 242 KMLFRKLGPQSPMRCSIETGPYLFHYLIENEICYLVLCERNYSKRLAFSYLEEIAQEFYQ 421
++L R G + S Y+FH + I L + + +R+ F++LE+I F +
Sbjct: 31 QVLERLPGGGADSHVSYTQDRYVFHAKRTDGITALCMADEAAGRRIPFAFLEDIHGRFVK 90
Query: 422 QYGKRVNT 445
YG+ T
Sbjct: 91 TYGRAALT 98
>03_06_0347 +
33293915-33294104,33295143-33295284,33295365-33295485,
33295590-33295652,33296524-33296553,33297411-33297905
Length = 346
Score = 31.1 bits (67), Expect = 0.48
Identities = 11/54 (20%), Positives = 29/54 (53%)
Frame = +2
Query: 266 PQSPMRCSIETGPYLFHYLIENEICYLVLCERNYSKRLAFSYLEEIAQEFYQQY 427
P S + + + F+YL+E+ Y V+ + +++ ++L+ + +F ++Y
Sbjct: 40 PASNNKFTYNCDGHTFNYLVEDGFTYCVVAVESVGRQIPIAFLDRVKDDFTKRY 93
>11_06_0030 -
19415263-19415388,19415649-19415728,19416196-19416232,
19416338-19416460,19417195-19417242,19417335-19417378,
19417461-19417506,19417581-19417623,19418329-19418422,
19418503-19418604,19419936-19420014,19420698-19420964
Length = 362
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -3
Query: 209 RSARLLAWSQPKAGRRRPAQSWSS 138
R+AR+L+ +P AGRRR A W +
Sbjct: 16 RAARMLSSGEPAAGRRRVAALWGN 39
>01_05_0201 -
19225597-19225890,19227832-19228030,19228133-19228321,
19228475-19228785,19228899-19229030
Length = 374
Score = 29.1 bits (62), Expect = 2.0
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 367 QQETCIQLFRRNCSRILSAVREK-GEHSDAAVHI 465
Q TC++ F N S I S++R+K H+ VHI
Sbjct: 138 QSNTCLRSFPSNISEIKSSLRQKYASHNKINVHI 171
>02_05_1125 +
34282559-34282796,34283247-34283437,34283540-34283629,
34283630-34283793,34284139-34284352
Length = 298
Score = 28.3 bits (60), Expect = 3.4
Identities = 12/47 (25%), Positives = 25/47 (53%)
Frame = +2
Query: 305 YLFHYLIENEICYLVLCERNYSKRLAFSYLEEIAQEFYQQYGKRVNT 445
++FH + + L + + +R+ F++LE+I F + YG+ T
Sbjct: 58 HVFHVKRTDGVTALCMADDAAGRRIPFAFLEDIHGRFVKTYGRAALT 104
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,166,708
Number of Sequences: 37544
Number of extensions: 231327
Number of successful extensions: 511
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -