Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_O10
         (484 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34372| Best HMM Match : No HMM Matches (HMM E-Value=.)             146   1e-35
SB_493| Best HMM Match : No HMM Matches (HMM E-Value=.)               140   4e-34
SB_33522| Best HMM Match : SCPU (HMM E-Value=6.8)                      41   6e-04
SB_648| Best HMM Match : SHQ1 (HMM E-Value=2)                          36   0.013
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_6852| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.1  
SB_40824| Best HMM Match : His_leader (HMM E-Value=3.1)                27   8.1  
SB_6883| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.1  

>SB_34372| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score =  146 bits (353), Expect = 1e-35
 Identities = 65/115 (56%), Positives = 89/115 (77%)
 Frame = +2

Query: 140 MTMIARVVDGLPLAATMQEDEQSGCNVLEYQNQAKMLFRKLGPQSPMRCSIETGPYLFHY 319
           MTMI R+ DGLPLAA+M  D+++   + +YQ+QAKMLFRKL   SP R SIE+G  +FHY
Sbjct: 1   MTMIGRLPDGLPLAASMPSDQETSQVLTQYQSQAKMLFRKLTNHSPARSSIESGNMMFHY 60

Query: 320 LIENEICYLVLCERNYSKRLAFSYLEEIAQEFYQQYGKRVNTVTRPYTFIEFDTW 484
           ++EN +C+L L ++ +SKR AFS+LE+IA EF ++YG +V+  TRPY FIEFDT+
Sbjct: 61  ILENSVCFLTLTDKPFSKRAAFSFLEDIASEFNREYGHQVSRATRPYPFIEFDTY 115


>SB_493| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score =  140 bits (340), Expect = 4e-34
 Identities = 63/112 (56%), Positives = 86/112 (76%)
 Frame = +2

Query: 140 MTMIARVVDGLPLAATMQEDEQSGCNVLEYQNQAKMLFRKLGPQSPMRCSIETGPYLFHY 319
           MTMI R+ DGLPLAA+M  D+++   + +YQ+QAKMLFRKL   SP R SIE+G  +FHY
Sbjct: 1   MTMIGRLPDGLPLAASMPSDQETSQVLTQYQSQAKMLFRKLTNHSPARSSIESGNMMFHY 60

Query: 320 LIENEICYLVLCERNYSKRLAFSYLEEIAQEFYQQYGKRVNTVTRPYTFIEF 475
           ++EN +C+L L ++ +SKR AFS+LE+IA EF ++YG +V+  TRPY FIEF
Sbjct: 61  ILENSVCFLTLTDKPFSKRAAFSFLEDIASEFNREYGHQVSRATRPYPFIEF 112


>SB_33522| Best HMM Match : SCPU (HMM E-Value=6.8)
          Length = 295

 Score = 40.7 bits (91), Expect = 6e-04
 Identities = 19/77 (24%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
 Frame = +2

Query: 227 YQNQAKMLFRKLGPQSPMRCSIETGPYLFHYLIENEICYLVLCERNYSKRLAFSYLEE-I 403
           +Q     +  K+ P +  +C+  +G Y FH ++E+ + YL + ++ + K+  +++LEE +
Sbjct: 126 FQQVTYTILEKI-PGNDTKCTYVSGSYQFHVIVEDGLVYLCMADKEFGKKDPYAFLEEAL 184

Query: 404 AQEFYQQYGKRVNTVTR 454
             +  +  G  +N V R
Sbjct: 185 YSDPGRAGGDAINKVQR 201


>SB_648| Best HMM Match : SHQ1 (HMM E-Value=2)
          Length = 327

 Score = 36.3 bits (80), Expect = 0.013
 Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
 Frame = +2

Query: 239 AKMLFRKLGPQSPMRCSIETGPYL--FHYLIENEICYLVLCERNYSKRLAFSYLEEIA-Q 409
           A + FR+   + P  C   T P +  +H+ ++ +I  + L E + S+   FSY+E++A  
Sbjct: 67  ANVFFRRNDKEPP--CDGNTHPNMNPYHFRLKYDIYQMFLPEGDLSEDSLFSYMEKMAYP 124

Query: 410 EFYQQYGKRVNTVTRP-YTFIEFDT 481
              + YG +V+++  P    + FDT
Sbjct: 125 NVIKTYGTKVSSLQAPSLPLVSFDT 149


>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6863

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 17/61 (27%), Positives = 28/61 (45%)
 Frame = -1

Query: 319  IMEEIWSCFYGTAHRRLGT*FSKQHFSLILILQNITAALLVFLHGRSQRQAVDDPRNHGH 140
            I + IW+C YG A R +      +H  L   ++    AL+V L    QR+ +    +  H
Sbjct: 3537 IQDLIWTCSYGAADRNVHAEVESEHDRLEAFIEE-GKALVVGLDEGPQREELQKEVDKLH 3595

Query: 139  Q 137
            +
Sbjct: 3596 E 3596


>SB_6852| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 62

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 112 YKKIY*NGSDDHD-CAGRRRPAFGCDHARRRAERL*CFG 225
           +KK Y + + +H+ C+   RP+F C  A RR  R  C G
Sbjct: 15  HKKCYQHYNSNHETCSVALRPSFSCKRAPRRL-RTSCAG 52


>SB_40824| Best HMM Match : His_leader (HMM E-Value=3.1)
          Length = 456

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -1

Query: 253 KQHFSLILILQNITAALLVFLHGRSQRQAVDDPRNHGHQNHFSI 122
           K H  + +I +   A+L    H RS        + H HQ+H++I
Sbjct: 237 KHHRDISIITETSLASLQHHYHHRSITTTSVSSQKHHHQHHYNI 280


>SB_6883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1170

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 383 FSYLEEIAQEFYQQYGKRVNTVTRPYTFIEFD 478
           F+ + +IAQ+     G  +NT TRP   + FD
Sbjct: 360 FTPIPDIAQKQLTMLGNSMNTYTRPIQVLVFD 391


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,347,564
Number of Sequences: 59808
Number of extensions: 283636
Number of successful extensions: 543
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)