Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_O10
         (484 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67949-6|AAB07559.2|  214|Caenorhabditis elegans Hypothetical pr...   120   6e-28
U00065-2|AAL27237.1|  672|Caenorhabditis elegans Prion-like-(q/n...    27   5.4  
U41022-1|AAA82338.3|  303|Caenorhabditis elegans Hypothetical pr...    27   7.1  
Z75531-12|CAA99806.4|  348|Caenorhabditis elegans Hypothetical p...    27   9.4  
Z67879-6|CAA91791.2| 1482|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AL023817-1|CAA19436.2| 1482|Caenorhabditis elegans Hypothetical ...    27   9.4  

>U67949-6|AAB07559.2|  214|Caenorhabditis elegans Hypothetical
           protein F55A4.1 protein.
          Length = 214

 Score =  120 bits (289), Expect = 6e-28
 Identities = 55/117 (47%), Positives = 82/117 (70%), Gaps = 2/117 (1%)
 Frame = +2

Query: 140 MTMIARVVDGLPLAATMQ--EDEQSGCNVLEYQNQAKMLFRKLGPQSPMRCSIETGPYLF 313
           +T+IARV DGL LA +++   D     ++++Y NQAKMLF+KL   +P + S+E+GP++F
Sbjct: 3   LTLIARVRDGLILATSIEGNNDGSGDSSMVKYSNQAKMLFKKLNG-APAQQSVESGPFVF 61

Query: 314 HYLIENEICYLVLCERNYSKRLAFSYLEEIAQEFYQQYGKRVNTVTRPYTFIEFDTW 484
           HY+I   IC LVLC+RN+ +++AF YL +I QEF  +   R+  V RPY F+EFD +
Sbjct: 62  HYIIVQNICALVLCDRNFPRKVAFQYLSDIGQEFLNENSSRIEQVVRPYHFLEFDKY 118


>U00065-2|AAL27237.1|  672|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 25
           protein.
          Length = 672

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +2

Query: 323 IENEICYLVLCERNYSKRLAFSYLEEIAQEFYQQYGKRVN 442
           I+N +C   +C  N + RL + Y   I     QQ    VN
Sbjct: 247 IDNSVCMNQMCTCNNNYRLVYGYCVPITSSICQQTQTLVN 286


>U41022-1|AAA82338.3|  303|Caenorhabditis elegans Hypothetical
           protein K08B5.2 protein.
          Length = 303

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 284 CSIETGPYLFHYLIENEICYLVLC-ERNYSKRLAFSYLEEIAQEFYQ 421
           C+ ET   +  YL+ENEI YL  C +  ++ RL+   +  +  +F +
Sbjct: 181 CNKETVSKVLQYLLENEI-YLTKCVKAKFNVRLSSPDIPHLIMKFIE 226


>Z75531-12|CAA99806.4|  348|Caenorhabditis elegans Hypothetical
           protein C54D10.6 protein.
          Length = 348

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 192 CMVAAKGRPSTTRAIMVIRTILVYFFI 112
           C++A  G  ST   IMV +   V+FFI
Sbjct: 284 CLIATHGLLSTITTIMVHKPYRVFFFI 310


>Z67879-6|CAA91791.2| 1482|Caenorhabditis elegans Hypothetical
           protein VF11C1L.1 protein.
          Length = 1482

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 358 KELQQETCIQLFRRNCSRILSAVREK 435
           KE Q++   +LFRRN  RIL  V ++
Sbjct: 362 KEEQRDNLEELFRRNTERILDEVMKR 387


>AL023817-1|CAA19436.2| 1482|Caenorhabditis elegans Hypothetical
           protein VF11C1L.1 protein.
          Length = 1482

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 358 KELQQETCIQLFRRNCSRILSAVREK 435
           KE Q++   +LFRRN  RIL  V ++
Sbjct: 362 KEEQRDNLEELFRRNTERILDEVMKR 387


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,807,446
Number of Sequences: 27780
Number of extensions: 217716
Number of successful extensions: 548
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)