Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_O09
(544 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom... 31 0.15
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual 30 0.25
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce... 28 1.0
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 27 2.4
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 25 5.5
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 25 7.2
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 25 7.2
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 25 7.2
SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces pombe... 25 7.2
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|... 25 7.2
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch... 25 7.2
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc... 25 9.5
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 25 9.5
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 25 9.5
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 25 9.5
SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8 |Schizo... 25 9.5
>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 326
Score = 30.7 bits (66), Expect = 0.15
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 37 YYLHDYSLNAHYYYHHLT 90
+Y YSLN H +YHHLT
Sbjct: 258 WYSTSYSLNFHLFYHHLT 275
>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 578
Score = 29.9 bits (64), Expect = 0.25
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = -1
Query: 280 YDTCIQNCSLRLRRYH*VHRFHQIH*KVFPYSNV 179
YD+ I N S RRY V + QI K FPY N+
Sbjct: 59 YDSIILNDSGLERRYAFVQKLEQILKKEFPYKNI 92
>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 698
Score = 27.9 bits (59), Expect = 1.0
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +3
Query: 72 LLSSSDLQQVARRRCSSSIKRETWRMVLVRTQTTCNTLLYGK 197
L+ LQ AR C S + W+ ++ + T LLY K
Sbjct: 594 LVQRGSLQDRARIYCLSDDELSKWKTIIYKENLTAENLLYPK 635
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 26.6 bits (56), Expect = 2.4
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = +1
Query: 226 ELSGNVVNEGYNFGYMYHNGIPYPVRPNHFHLDH-PEYLGE--LEKIKDYERRLRDGIEN 396
+LSGN + NF + H + Y ++D+ Y+ + LE + DYE+R++ E
Sbjct: 973 KLSGNPIISTPNF--LTHFALAYQEYELESNIDNLSSYISDQNLELLPDYEQRIKVLQEL 1030
Query: 397 GYI 405
GYI
Sbjct: 1031 GYI 1033
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 25.4 bits (53), Expect = 5.5
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = -2
Query: 339 QILWMIEVEMIRSNWIWYTVMIHVSKIVAFVYDVTTKF 226
Q+ W + V+M+ NW Y + ++ + F+ D T +
Sbjct: 709 QVYWRLGVQMVALNWQTYDTGLQINDAL-FIADPPTGY 745
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -1
Query: 115 HRLLATCCKSDDDNNSGHLNCNHV 44
H L+ K+DDD ++ HL +H+
Sbjct: 800 HALMRYLGKTDDDEDNSHLLVHHI 823
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -2
Query: 357 YFFKFTQILWMIEVEMIRSNWIWYTVMIHVSKIVAFVYDV 238
Y F + L + V+ +R N W T +S ++A +DV
Sbjct: 337 YTFAMLEQLLELSVKTLRQNTCWSTSWEMLSSLLAIDFDV 376
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 25.0 bits (52), Expect = 7.2
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -2
Query: 192 HIVTCYKLFVYEPVP 148
H+++CYK +EP P
Sbjct: 594 HVLSCYKTLFFEPPP 608
>SPAC2C4.05 |||cornichon family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = -2
Query: 249 VYDVTTKFTDFTKSIRKSFHIVTCYKLFVY 160
++D TT F D + ++SF + C+ +F +
Sbjct: 92 MHDSTTIFKDVSSRQKRSFFKLACFAVFFF 121
>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 552
Score = 25.0 bits (52), Expect = 7.2
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +1
Query: 451 IDILGRLIEAGVASPNVQYYKDFISSWK 534
I G I AG + VQY K+ IS WK
Sbjct: 220 ISCYGCNIPAGFIAYGVQYAKNTISPWK 247
>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 474
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 19 QSASMSYYLHDYSLNAHYYYHHLTYNKWLG 108
Q+A + Y HD +L H Y H +N W+G
Sbjct: 336 QAAGIFY--HDLALRPHAYQH---FNTWMG 360
>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +1
Query: 241 VVNEGYNFGYMYHNGIPYPVRPNHFHLDHPEYLGELEKIKD 363
+ +EG N+ Y++HN + Y + + + D E L L K+ D
Sbjct: 50 LTHEGINYIYIHHNDV-YLLALSKMNSDAMEMLVFLRKMAD 89
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 361 DYERRLRDGIENGYIINSTGDHVPIHTPEG 450
D+ R + G +N +++ GDH+ I TP G
Sbjct: 1224 DFPRYVNLGGKN-HVLMGKGDHIVIETPGG 1252
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 202 KVFPYSNVLQVVCVRTSTIRHVSLLIEELH 113
K F YS+ L +V S + +++LIE LH
Sbjct: 375 KSFCYSDALDMVLENGSPVLIITMLIELLH 404
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 24.6 bits (51), Expect = 9.5
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Frame = +1
Query: 280 NGIPYPVRPNHFHLDHPEYLGELEKIKDYERRL---RDGIENGYIINSTGDHVPIHTPEG 450
N + P P H LD + L LEK K+ + + D G I S + H P
Sbjct: 410 NELKVPSYPLHAQLDQKKRLQSLEKFKNNPKGVLVCTDVAARGIDIPSVTHVIHYHVPHT 469
Query: 451 IDI 459
D+
Sbjct: 470 ADM 472
>SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 400
Score = 24.6 bits (51), Expect = 9.5
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 52 YSLNAHYYYHHLTYNKWLGGDV-VPLLKERRGEWYWFVHKQ 171
+SL YY + + K +G D+ +PL K EW +H Q
Sbjct: 355 FSLLLQLYYCNQSLTK-VGTDISIPLSKILGSEWLEMIHSQ 394
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,265,170
Number of Sequences: 5004
Number of extensions: 48875
Number of successful extensions: 148
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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