Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_O09
(544 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0317 + 7186148-7186243,7186406-7186572,7186766-7186878,718... 28 4.2
08_02_0754 - 20810449-20810517,20810965-20811036,20811145-208112... 28 5.5
06_01_0604 - 4358278-4358442,4358835-4358943,4359236-4359331,435... 28 5.5
05_06_0024 + 25014274-25014375,25014655-25014720,25015117-250152... 28 5.5
10_07_0098 - 12844631-12845074,12845329-12846570 27 9.7
08_02_0546 - 18474217-18475133,18475207-18475396,18475870-184763... 27 9.7
06_01_0579 + 4099039-4099086,4099798-4099848,4100151-4100286,410... 27 9.7
05_03_0596 - 16005622-16006122 27 9.7
>09_02_0317 +
7186148-7186243,7186406-7186572,7186766-7186878,
7187059-7187133,7187215-7187328,7187545-7187612,
7187690-7187773,7187966-7188019,7188104-7188184,
7188279-7188372,7188501-7188574,7188656-7188766,
7188976-7189032,7189119-7189223,7189584-7189687,
7190021-7190186,7190279-7190416
Length = 566
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/45 (26%), Positives = 27/45 (60%)
Frame = +1
Query: 265 GYMYHNGIPYPVRPNHFHLDHPEYLGELEKIKDYERRLRDGIENG 399
G + +G V+P ++ +YLG++E ++DY ++R+ ++ G
Sbjct: 485 GGIQFDGSGTNVKPITLTVEDQDYLGDIELLQDYLEKVRNIVKPG 529
>08_02_0754 -
20810449-20810517,20810965-20811036,20811145-20811252,
20811326-20811378,20811401-20811514,20812833-20812962
Length = 181
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Frame = +1
Query: 115 VVPLLKERRGEWY--WFVHKQLVTRYYMERLSNGFGEIGE-LSGN 240
V+P + E G Y WFV++ L+ + E L+NGF + + ++GN
Sbjct: 135 VLPNILELVGLGYSGWFVYRYLLFKENREELANGFDALKKRITGN 179
>06_01_0604 -
4358278-4358442,4358835-4358943,4359236-4359331,
4359823-4359956,4360639-4360905,4361225-4361310,
4361409-4361501,4361601-4361696,4361986-4362093,
4362473-4362493,4363856-4364156
Length = 491
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 394 NGYIINSTGDHVPIHTPEGIDILGRLIEAGVASPNVQ-YYKD 516
N + G VP+H P+ IL + AG P+VQ +Y D
Sbjct: 449 NFVTVRGAGHEVPLHRPKQALILIKSFLAGSPMPSVQDFYSD 490
>05_06_0024 +
25014274-25014375,25014655-25014720,25015117-25015233,
25015757-25015834,25015911-25016016,25016150-25016196,
25016386-25016463,25016898-25016963,25017102-25017165,
25017406-25017428
Length = 248
Score = 27.9 bits (59), Expect = 5.5
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Frame = -2
Query: 351 FKFTQILWMIEV-EMIRSNWIWYTVMIHVSKIVAF----VYDVTTKFTDFTKSIRKSFHI 187
+K + I+ M+++ + W+ M ++KIV VY+V T +T F ++ +H+
Sbjct: 68 YKQSGIIPMLDLAQQQHGGWVPVAAMNAIAKIVEVAPIRVYEVATFYTMFNRTKVGKYHL 127
Query: 186 VTC 178
+ C
Sbjct: 128 LVC 130
>10_07_0098 - 12844631-12845074,12845329-12846570
Length = 561
Score = 27.1 bits (57), Expect = 9.7
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Frame = +1
Query: 4 WHY-HCQSASMSYYLHDYSLNAHYYYHHLTYNKWLGGDVVPLLKERRGEWYWF 159
W Y H Q+A +Y YY+ H W G ++P G+ +WF
Sbjct: 312 WFYQHAQTALKKGEFVEYIPTREYYHRHTRCLYWEGKLILPF-----GDQFWF 359
>08_02_0546 -
18474217-18475133,18475207-18475396,18475870-18476313,
18476629-18477495,18478858-18479367
Length = 975
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/54 (25%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = -1
Query: 187 SNVLQVVCVRTSTIRHVSLLIEELHRLLATCCKSDD--DNNSGHLNCNHVSSRT 32
++V+ +CVR +T+ HV +E L + + T ++ + D ++ LN + S++
Sbjct: 716 ASVIPELCVRINTLYHVQTELESLEKKIKTYFRNVESIDRSTDELNIHFKLSQS 769
>06_01_0579 +
4099039-4099086,4099798-4099848,4100151-4100286,
4100287-4100401,4100496-4100528,4101037-4101166,
4101663-4101751,4102042-4102148,4102238-4102309,
4102384-4102764,4104907-4105064,4105581-4105674,
4106082-4106089,4106297-4106387,4107136-4107289,
4108257-4108377,4108468-4108551,4108946-4109065,
4109181-4109393,4109482-4109544,4109668-4109783,
4110132-4110190,4111126-4111445
Length = 920
Score = 27.1 bits (57), Expect = 9.7
Identities = 9/36 (25%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +1
Query: 1 VWH---YHCQSASMSYYLHDYSLNAHYYYHHLTYNK 99
VWH + C + + Y +++S++ ++ YH Y +
Sbjct: 577 VWHPECFRCHACNQPIYDYEFSMSGNHPYHKTCYKE 612
>05_03_0596 - 16005622-16006122
Length = 166
Score = 27.1 bits (57), Expect = 9.7
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 66 PLLLSSSDLQQVARRRCSSSIKRETWRMVLVR 161
P LS+ DL+++ R R + + T RM+LVR
Sbjct: 9 PTGLSTLDLKEIKRARWTGMLAITTLRMILVR 40
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,264,947
Number of Sequences: 37544
Number of extensions: 301222
Number of successful extensions: 836
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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