Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_O09
         (544 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8817| Best HMM Match : I-set (HMM E-Value=0)                        33   0.20 
SB_50367| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_28068| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_45852| Best HMM Match : I-set (HMM E-Value=0)                       29   2.5  
SB_5144| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.2  
SB_32019| Best HMM Match : Ion_trans_2 (HMM E-Value=1.6e-15)           29   3.2  
SB_47918| Best HMM Match : RnaseH (HMM E-Value=0.03)                   28   4.3  
SB_49550| Best HMM Match : SSXT (HMM E-Value=5.5)                      28   4.3  
SB_59790| Best HMM Match : VWA (HMM E-Value=0)                         28   5.7  
SB_2865| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.5  
SB_3593| Best HMM Match : NAD4L (HMM E-Value=2.3)                      27   7.5  
SB_43241| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_6604| Best HMM Match : Extensin_2 (HMM E-Value=0.27)                27   9.9  
SB_58523| Best HMM Match : Tctex-1 (HMM E-Value=1.8e-11)               27   9.9  
SB_28361| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 27   9.9  
SB_3801| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.9  

>SB_8817| Best HMM Match : I-set (HMM E-Value=0)
          Length = 2526

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 421  DHVPIHTPEGIDILGRLIEAGVASPNVQYYKD 516
            D  P+HT EG DI  ++  +G     V++YKD
Sbjct: 1069 DKTPVHTVEGSDITMKVAVSGTPRTEVEWYKD 1100


>SB_50367| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1498

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = +1

Query: 355 IKDYERRLRDGIENGYIINSTGDHVPIHTPEGIDILGRLIEAGVASPNVQYYKDFISSWK 534
           I++  R LR+ I N    N+ G    +   E  DIL  +++  +   ++Q  KD   SW+
Sbjct: 807 IRELNRLLRNEISNAQGPNAAGQKNFLFQ-EVKDILSNVVQRNMVRESLQAKKDAFESWR 865

Query: 535 YVL 543
            V+
Sbjct: 866 QVI 868


>SB_28068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
 Frame = +1

Query: 43  LHDYSLNAHYYYHHLTYNKWL------GGDVVPLLKERRGEWYWFVHKQLVTRYYMERL 201
           L  Y L  H  Y+  + N+         G ++P+ ++    W WF HK+  TR Y++ L
Sbjct: 11  LKKYELTIHEIYNDASSNRQSCSKTKSNGKILPVKRKWTWMWRWFTHKE--TRRYVDML 67


>SB_45852| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1122

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +1

Query: 7    HYHCQSASMSYYLHDYSLNAHYYYHHLTYN 96
            HYH       +Y H      H+++HH  YN
Sbjct: 1031 HYHHHRRRHHHYHHQQQHQFHHHHHHTHYN 1060


>SB_5144| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1015

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 237 TTKFTDFTKSIRKSFHIVTCYKLFVYEPVPF 145
           TTK  + TK   K FH + C++    EP+ F
Sbjct: 196 TTKSEEITKQFEKVFHGIGCFQDKTGEPIEF 226


>SB_32019| Best HMM Match : Ion_trans_2 (HMM E-Value=1.6e-15)
          Length = 299

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 10  YHCQSASMSYYLHDYSLNAHYYYHHLTYNKWLGGDVVPL 126
           Y C  A +  YL ++S    +Y   +T++    GD+VPL
Sbjct: 138 YLCLMAGLGMYLEEWSFLDSFYAWFITFSTIGFGDLVPL 176


>SB_47918| Best HMM Match : RnaseH (HMM E-Value=0.03)
          Length = 327

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
 Frame = +1

Query: 223 GELSGNVVNEGYNFGY--MYHN---GIPYPVRPNHFHLDHPEYLGELEKIKDYERRLRDG 387
           G  S  +  +  N G+  ++ N   G  + VR    H+++ E L     +K Y + LRD 
Sbjct: 56  GAPSHTLTTDASNLGWGAVFENDSTGGTWSVREQKHHINYLELLAVFLGLKTYCKDLRDA 115

Query: 388 IENGYIINSTG----DHV-PIHTPEGIDILGRLI 474
                I N+T     +H+   H+PE +++LG+ I
Sbjct: 116 HVRAMIDNTTAIAVLNHMGTSHSPE-LNLLGKTI 148


>SB_49550| Best HMM Match : SSXT (HMM E-Value=5.5)
          Length = 283

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 504 LNIRRSNTGFDKTAKNIDALRSMNGNMITSAVNDITIF 391
           L++   NTG  KTA+++   RS  G    S V D ++F
Sbjct: 242 LSLAAPNTGMSKTARSVRIQRSARGWSRLSVVPDESVF 279


>SB_59790| Best HMM Match : VWA (HMM E-Value=0)
          Length = 4151

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
 Frame = +1

Query: 112  DVVPLLKERRGEWYWFVHKQLVTRYYMERLSNGF-----GEIGELSGNVVNEGYN----F 264
            D  P  + + G  +W V+K+L  RY + R +N F     G I   +   V   Y+    F
Sbjct: 3241 DYNPSSRNKWGVHFWIVNKRLFVRYTV-RKTNDFTAALMGRIKSNTWEYVGTSYDWNTGF 3299

Query: 265  GYMYHNG 285
             Y++ NG
Sbjct: 3300 AYLFRNG 3306


>SB_2865| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 140

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/66 (24%), Positives = 34/66 (51%)
 Frame = +2

Query: 248 TKATILDTCIITVYHIQLDLIISTSIIQSIWVNLKK*RITKDVYVMELKMVISLTALVIM 427
           T AT++   ++TV  + L  ++  ++I  + V L    + K V VM + +V  +   V+M
Sbjct: 8   TLATVMMVTLVTVIMVTLVTVMMVTLITVMMVTLVMVIMVKLVTVMMVTLVTVVMVTVMM 67

Query: 428 FPFILL 445
              +++
Sbjct: 68  VTLVMV 73


>SB_3593| Best HMM Match : NAD4L (HMM E-Value=2.3)
          Length = 277

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 1/97 (1%)
 Frame = +2

Query: 230 LVVTS*TKATILDTCIITVYHIQLDLIISTSIIQSIW-VNLKK*RITKDVYVMELKMVIS 406
           ++V   T   I+   IIT   I + LII+T+ I  ++ +      I   +    + +V+ 
Sbjct: 23  MIVLFITITAIMIVLIITTTGIMIVLIITTTAIMIVFIITTTAIMIVLIITTTAIMIVLI 82

Query: 407 LTALVIMFPFILLRASIFXXXXXXXXXXXXMFNTTKT 517
           +T   IM    +   +I             +F TT T
Sbjct: 83  ITTTAIMIVLFITTTAIMIALIITITTIVIVFITTTT 119


>SB_43241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2022

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 454 RCPQEYEWEHDHQCC 410
           R P+E  W+ DH CC
Sbjct: 566 RQPEEEPWQSDHSCC 580


>SB_6604| Best HMM Match : Extensin_2 (HMM E-Value=0.27)
          Length = 492

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 202 SNGFGEIGELSGNVVNEGYNFGYMYHNG 285
           +NG+      + N  N GYN+   Y+NG
Sbjct: 394 NNGYNNNNGYNSNGYNNGYNYNNGYYNG 421


>SB_58523| Best HMM Match : Tctex-1 (HMM E-Value=1.8e-11)
          Length = 541

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
 Frame = +1

Query: 298 VRPNHFHLDHPEYLGELEKIKDYERRLRDGIENGYIINSTG----DHV-PIHTPEGIDIL 462
           VR    H+++ E L     +K Y + LRD      I N+T     +H+   H+PE +++L
Sbjct: 104 VREQKHHINYLELLAVFLGLKTYCKDLRDAHVRAMIDNTTAIAVLNHMGTSHSPE-LNLL 162

Query: 463 GRLI 474
           G+ I
Sbjct: 163 GKTI 166


>SB_28361| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 551

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = +1

Query: 286 IPYPVRPNHFHLDHPEYLGELEKIKDYERRLRDGIENGYIINSTGDHVPIHTPEGIDILG 465
           +P     N    DH +++ ELE +K  E         GY+  S  + + I      D+LG
Sbjct: 361 LPLAFTENATEDDHKDFMAELELMKSLEHHANVIALYGYVTESEPEMMIIEFVAHGDLLG 420

Query: 466 RL 471
            L
Sbjct: 421 YL 422


>SB_3801| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 421

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
 Frame = +1

Query: 31  MSYYLHDYSLNAHYYYHHLTYN-KWLGGDVVPLL---KERRGEWYWFVHKQLVTRYYMER 198
           +SY   D+  +    +H    + KW+  +V   L   K +  +W W+ H+      Y  R
Sbjct: 103 ISYRASDFLRSDAVVFHGCQLSRKWIKNEVTTSLIHRKPKNQKWVWYEHENPHNIGYDAR 162

Query: 199 LSNGFGEI 222
           + NG  +I
Sbjct: 163 VLNGMIDI 170


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,548,027
Number of Sequences: 59808
Number of extensions: 362851
Number of successful extensions: 1259
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1212
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)