Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_O08
         (452 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    29   0.44 
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    26   2.3  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   3.1  
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p...    25   5.4  
SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ...    25   7.2  
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo...    25   7.2  
SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual        25   7.2  
SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|c...    24   9.5  

>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 28.7 bits (61), Expect = 0.44
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 63  RSATGNSWTTISGGWNS 113
           +S  G+SWTT++  WNS
Sbjct: 454 KSVIGSSWTTVNNDWNS 470


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +2

Query: 62  SERNWKQLDNDLWRLE-QWLQFAEATEASRTDPPEQYDALEDVIQDHREFLLDLDSHKSI 238
           +ERN K+ +N+ W L+   L    +   S TD    Y  L +      E LL+  S++ +
Sbjct: 589 TERNNKENENNFWNLKFNLLTMLRSFHGSFTDETNGYFTLLNDFNASMEELLNTHSNQLL 648

Query: 239 V 241
           +
Sbjct: 649 I 649


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 270 SPRMLGPRRTRSACGHGSPPTTSAGTQLAS 359
           SPR+ GP    +    G PPTTS+    AS
Sbjct: 259 SPRVFGPTLGYNTPPFGYPPTTSSALPNAS 288


>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
           protein 1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 567

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +3

Query: 294 RTRSACGHGSPPTTSAGTQLASELRTGSVGSSAPLV 401
           RTR+    G PP TS    L    R G V SS  ++
Sbjct: 294 RTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAII 329


>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 14/61 (22%), Positives = 25/61 (40%)
 Frame = +2

Query: 59  CSERNWKQLDNDLWRLEQWLQFAEATEASRTDPPEQYDALEDVIQDHREFLLDLDSHKSI 238
           C  R       D W + +   F +  +   TDP + ++A  ++I    +F   L+    I
Sbjct: 269 CYRREAGSHGRDAWGIFRVHAFEKIEQFVLTDPEKSWEAFTEMINHAEDFYKSLELPYRI 328

Query: 239 V 241
           V
Sbjct: 329 V 329


>SPBC1604.20c |tea2|klp4|kinesin-like protein
           Tea2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +2

Query: 77  KQLDNDLWRLEQWLQFAEATEASRTDPPEQYDALEDVIQDHREFLLDL 220
           KQL +DL   + ++   EA  +  T        +E+++ DH   + DL
Sbjct: 499 KQLTSDLEERDTYIAMLEAERSQGTAISRARLRMEELLSDHNFEIADL 546


>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 108 SNRQRSLSNCFQLRSEHRGHVSLPDSCSHVSA 13
           S R ++  N  Q+  E+ GH+SL  + SH  A
Sbjct: 48  STRPQTDGNSNQIPMENVGHISLSSANSHAYA 79


>SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 449

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +2

Query: 74  WKQLDNDLWRLEQWLQFAEATEASRTDPPEQYDALEDVIQ 193
           WK L+  L  LE       A        PEQ DAL +V++
Sbjct: 379 WKSLERPLAVLEHQSMLVFAQRYKFDITPEQKDALLEVVR 418


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,655,119
Number of Sequences: 5004
Number of extensions: 27045
Number of successful extensions: 105
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)