Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_O08
(452 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0305 - 42631214-42631330,42631423-42631527,42633208-426332... 31 0.43
12_01_0288 - 2160981-2161076,2161150-2161236,2161333-2161419,216... 30 0.76
05_07_0287 + 28993615-28995617,28996464-28996524,28996603-28996830 28 3.1
11_01_0393 + 2961434-2961564,2961862-2961865,2962429-2963970,296... 28 4.0
11_01_0392 + 2955442-2956876,2957694-2957851 28 4.0
02_02_0542 - 11352655-11352759,11353320-11353496,11353589-113536... 27 5.3
03_06_0411 + 33741903-33742163,33742990-33743168,33743342-337434... 27 7.1
03_05_1024 + 29802831-29804208,29804710-29804759,29805569-298059... 27 7.1
10_08_0774 + 20478203-20479393 27 9.3
09_04_0600 + 18883094-18883393,18883606-18883755,18883851-188841... 27 9.3
08_02_0266 + 15051868-15052286,15052376-15052475,15053540-150535... 27 9.3
08_01_0771 - 7464383-7464655,7464901-7464915,7465098-7465418 27 9.3
06_03_1208 - 28422941-28423139,28423854-28424434,28424705-284250... 27 9.3
06_03_0121 + 16864735-16865619,16865706-16866026 27 9.3
04_04_1671 + 35231546-35232430,35232517-35232837 27 9.3
>01_07_0305 -
42631214-42631330,42631423-42631527,42633208-42633216,
42635198-42636142,42636349-42636450,42637210-42637302
Length = 456
Score = 31.1 bits (67), Expect = 0.43
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +3
Query: 36 RVG*RALYARSATGNSWTTISGGWNSGCSLLK-RPKRPEPIPLNSMMPWKMLFRITAS 206
R G R RS W + G + CS + R +RP P+PL+S P + R S
Sbjct: 307 RRGWRQRGRRSPAHPPWLRMGRGGGARCSRRRGRSRRPPPLPLSSFFPARRSARCAGS 364
>12_01_0288 -
2160981-2161076,2161150-2161236,2161333-2161419,
2161641-2161726,2161805-2161908,2162618-2162704,
2162790-2162913,2163058-2163176,2163268-2163397,
2163583-2163671,2163804-2163892,2164579-2164672,
2164778-2164857,2164952-2165041,2166307-2166393,
2166495-2166539,2166966-2167042,2167120-2167225,
2167383-2167464,2167553-2167624,2168106-2168183,
2168259-2168349,2168826-2168979
Length = 717
Score = 30.3 bits (65), Expect = 0.76
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +3
Query: 270 SPRMLGPRRTRSACGHGSPPTTSAGTQLASELRTG 374
+P RR R+ GH PPT S G LA+ G
Sbjct: 13 APMGAAQRRLRAVSGHLQPPTESGGVDLAANPTAG 47
>05_07_0287 + 28993615-28995617,28996464-28996524,28996603-28996830
Length = 763
Score = 28.3 bits (60), Expect = 3.1
Identities = 17/45 (37%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +3
Query: 291 RRTRSAC-GHGSPPTTSAGTQLASELRTGSVGSSAPLVHNQQFHR 422
RRT S H PP G + TG GS P N Q HR
Sbjct: 74 RRTASLRPSHAEPPPLGRGPEHYRSRYTGRYGSGFPHSPNDQLHR 118
>11_01_0393 +
2961434-2961564,2961862-2961865,2962429-2963970,
2964572-2964675,2964791-2964877,2965378-2965414,
2965729-2965801,2965963-2967494
Length = 1169
Score = 27.9 bits (59), Expect = 4.0
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 143 SRTDPPEQYDALEDVIQDHREFLLDLDSH 229
SRT+ + D LE I D REF++ L SH
Sbjct: 209 SRTNLKDVVDGLETKIADMREFVILLGSH 237
Score = 27.9 bits (59), Expect = 4.0
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 143 SRTDPPEQYDALEDVIQDHREFLLDLDSH 229
SRT+ + D LE I D REF++ L SH
Sbjct: 810 SRTNLKDVVDGLETKIADMREFVILLGSH 838
>11_01_0392 + 2955442-2956876,2957694-2957851
Length = 530
Score = 27.9 bits (59), Expect = 4.0
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 143 SRTDPPEQYDALEDVIQDHREFLLDLDSH 229
SRT+ + D LE I D REF++ L SH
Sbjct: 127 SRTNLKDVVDGLETKIADMREFVILLGSH 155
>02_02_0542 -
11352655-11352759,11353320-11353496,11353589-11353699,
11355606-11355667,11355739-11355941,11357109-11357281
Length = 276
Score = 27.5 bits (58), Expect = 5.3
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -3
Query: 450 STGHQLDHDIGGTVGCARAARWSRRC 373
STGH+ D T AARW RRC
Sbjct: 20 STGHKRQRD---TTRSGEAARWERRC 42
>03_06_0411 +
33741903-33742163,33742990-33743168,33743342-33743426,
33743506-33743822,33743983-33744106,33744810-33744902,
33745296-33745364,33745654-33745704,33745705-33745854,
33745904-33746125,33746413-33746568,33746716-33746823,
33746992-33747126,33747209-33747364,33747544-33747664,
33748182-33748267
Length = 770
Score = 27.1 bits (57), Expect = 7.1
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 273 PRMLGPRRTRSACGHGSPPTTSAGTQLASELRTGSVGSSAP 395
PR+L PRR R S P ++A T + +R + +SAP
Sbjct: 13 PRLLPPRRRRFPTPSSSSP-SAASTSTSRVVRLRAAAASAP 52
>03_05_1024 +
29802831-29804208,29804710-29804759,29805569-29805954,
29807753-29807813,29807921-29807941
Length = 631
Score = 27.1 bits (57), Expect = 7.1
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 321 SPPTTSAGTQLASELRTGSVGSSAPLVHNQQFHR 422
S PT+S + A +R + SS+ + H+Q FH+
Sbjct: 19 SQPTSSKSSPAAIVVRPPATASSSSMSHSQGFHQ 52
>10_08_0774 + 20478203-20479393
Length = 396
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -2
Query: 379 TLPVRSSLASCVPALVVGGEPCPHALRVRRGPSMRGDMCADHVQR 245
T+PV S A V L +G P P + + G + CA H +R
Sbjct: 41 TVPVHFSQAFYVVNLTIGTPPQPVSAIIDIGGELVWTQCAQHCRR 85
>09_04_0600 +
18883094-18883393,18883606-18883755,18883851-18884142,
18884697-18884858,18884958-18885021,18887573-18888080
Length = 491
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 429 HDIGGTVGCARAARWSRRCQCAA 361
+DI + A RW+ RC+CAA
Sbjct: 310 NDINNCIYWLDAIRWAGRCECAA 332
>08_02_0266 +
15051868-15052286,15052376-15052475,15053540-15053581,
15053734-15053930,15055412-15055508,15055604-15055699,
15056395-15056633,15056728-15056811,15056898-15057185,
15057658-15057718,15061093-15061362,15061663-15061722
Length = 650
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = -3
Query: 120 CSHCSNRQRSLSNCFQLRSEHRGHVSLPDSCS 25
CS+C ++Q C QL S H + + C+
Sbjct: 292 CSNCQHKQHQCFKCGQLDSSHETNPKVFQCCN 323
>08_01_0771 - 7464383-7464655,7464901-7464915,7465098-7465418
Length = 202
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 75 GNSWTTISGGWNSGCSLLKRPKRPEPIPLNSMMPW 179
GN W T G +SG + RP++ P P+ +M W
Sbjct: 57 GNHWCT---GTHSGADMRARPRQCSPAPVR-VMTW 87
>06_03_1208 -
28422941-28423139,28423854-28424434,28424705-28425078,
28425235-28425339,28425902-28425970,28426084-28426156,
28426395-28426478,28426616-28426648,28426731-28426790,
28427535-28427627,28427851-28427970,28428804-28428886,
28428887-28429007,28429114-28429164,28429245-28429333,
28429429-28429561,28430220-28430354,28430581-28430952,
28431679-28431796,28431883-28431998,28432131-28432442
Length = 1106
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -1
Query: 254 RSAIPLSTCASPGQGETRGD 195
R A P +T ASPGQ RGD
Sbjct: 9 RGAPPPATAASPGQKRPRGD 28
>06_03_0121 + 16864735-16865619,16865706-16866026
Length = 401
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 179 PRHHTVQGDRFWTLRSLQQTAATVPTAR 96
PR HTVQG T+RS Q + PT +
Sbjct: 312 PRQHTVQGGGGPTIRSDPQPQTSKPTGQ 339
>04_04_1671 + 35231546-35232430,35232517-35232837
Length = 401
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 179 PRHHTVQGDRFWTLRSLQQTAATVPTAR 96
PR HTVQG T+RS Q + PT +
Sbjct: 312 PRQHTVQGGGGPTIRSDSQPQTSNPTGQ 339
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,678,767
Number of Sequences: 37544
Number of extensions: 243135
Number of successful extensions: 1145
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -