Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_O08
(452 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59115| Best HMM Match : Spectrin (HMM E-Value=0) 47 8e-06
SB_48154| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.78
SB_41695| Best HMM Match : Spectrin (HMM E-Value=0) 29 1.4
SB_14079| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_57728| Best HMM Match : Usp (HMM E-Value=3.9e-20) 28 4.2
SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2) 28 4.2
SB_31961| Best HMM Match : EGF (HMM E-Value=0) 27 5.5
SB_20264| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037) 27 7.3
SB_57054| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_54650| Best HMM Match : IncA (HMM E-Value=0.84) 27 9.6
SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55) 27 9.6
SB_21520| Best HMM Match : Trypsin (HMM E-Value=0) 27 9.6
>SB_59115| Best HMM Match : Spectrin (HMM E-Value=0)
Length = 1457
Score = 46.8 bits (106), Expect = 8e-06
Identities = 22/97 (22%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
Frame = +2
Query: 62 SERNWKQLDNDLWRLEQWLQFAEATEASRTDPPEQYDALEDVIQDHREFLLDLDSHKSIV 241
++R+W+ + L + WL+ AE +++ D D ++D DH +F+++L SH++ V
Sbjct: 474 ADRDWEDYNAQLQEVLTWLREAETKLSNQADISTDVDVVKDQFHDHEDFMMELTSHQASV 533
Query: 242 VS-LNXXXXXXXXXXXXXXXXERVRARLAADNQRWDT 349
L +R ++ + N+RW++
Sbjct: 534 GGVLEFGNQLISEGVVTEKEENEIRDQMISLNERWES 570
>SB_48154| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 367
Score = 30.3 bits (65), Expect = 0.78
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Frame = +2
Query: 68 RNWKQLDNDLWRLE----QWLQFAEATEASRTDPPEQYDALEDVIQDHREFLLDLDSHKS 235
+NW+++ +D W LE L+F+E+T + P + E+ + D E + L+S +
Sbjct: 91 KNWRKITSDPWVLETASGYHLEFSESTLQNELPKPPPFGEDEEKLID--EEITKLNSRGA 148
Query: 236 IVVSLN 253
I+ SL+
Sbjct: 149 IIKSLD 154
>SB_41695| Best HMM Match : Spectrin (HMM E-Value=0)
Length = 2322
Score = 29.5 bits (63), Expect = 1.4
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +2
Query: 83 LDNDLWRLEQWLQFAEATEASRTDPPEQYDALEDVIQDHREFLLDLDSHKSIVVSL 250
L L +++ WL AE A+ + YDA++ +H+ F ++ H I V L
Sbjct: 1389 LRQHLNKMDDWLTKAEKRIAATEEIGPGYDAVQKQQDEHQRFQDEIREHSMITVIL 1444
>SB_14079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 546
Score = 27.9 bits (59), Expect = 4.2
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -1
Query: 254 RSAIPLSTCASPGQGETRGDP-E*HLPRHHTVQGDRFW 144
RS IP + ++P + G P + LP++ + GDR+W
Sbjct: 400 RSLIPDESFSAPNYWQESGFPSDFFLPKNARLNGDRYW 437
>SB_57728| Best HMM Match : Usp (HMM E-Value=3.9e-20)
Length = 744
Score = 27.9 bits (59), Expect = 4.2
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 309 CGHGSPPTTSAGTQLASELRTGSVGSSAPLVH 404
C HG+PP T G +R G G + PL H
Sbjct: 19 CHHGTPPLTHGGMSPHGTVRLGRHG-TPPLTH 49
>SB_34438| Best HMM Match : Ribosomal_L23eN (HMM E-Value=2)
Length = 772
Score = 27.9 bits (59), Expect = 4.2
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +3
Query: 264 HMSPRMLGPRRTRSACGHGSPPTTSAGTQLASELRTGSVGSSAPLVHN 407
HM+ +M GP+ G+P + Q SE RTG VG S P +HN
Sbjct: 484 HMAGQMPGPQPM------GTPTSGRRSQQGFSERRTGMVG-SPPKIHN 524
>SB_31961| Best HMM Match : EGF (HMM E-Value=0)
Length = 2813
Score = 27.5 bits (58), Expect = 5.5
Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +2
Query: 23 CEHESGRLTCPLCSERNWKQLDNDLWRLEQWLQFAEATEASRTDPPEQYDALEDVIQD-H 199
C+H +G TCP + + +N + RL+ +F ++ + + D ++ ++DV+
Sbjct: 1902 CDHVTGACTCPTGFTGKYCETENLIKRLD-IEKFNQSIQEAPWDAVFVFEDIDDVVHAWE 1960
Query: 200 REFLLDLDSH 229
+ F L+SH
Sbjct: 1961 QTFNTVLESH 1970
>SB_20264| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 480
Score = 27.5 bits (58), Expect = 5.5
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -1
Query: 254 RSAIPLSTCASPGQGETRGDP-E*HLPRHHTVQGDRFWTLRSL 129
RS IP + ++P + G P + LP++ + GDR+W ++
Sbjct: 340 RSVIPDISFSAPNYMQDSGFPSDFFLPKNARLNGDRYWAAATI 382
>SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037)
Length = 303
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Frame = +2
Query: 5 ASYALTCEHE--SGRLTCPLCSERNWKQLDNDLWRLE 109
ASY T E + + C +C E +W + + W E
Sbjct: 35 ASYEETAEDDFLESNVGCDICEEESWDEFPENSWPFE 71
>SB_57054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 955
Score = 26.6 bits (56), Expect = 9.6
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +2
Query: 104 LEQWLQFAEATEASRTDPPEQYDALEDVIQDHREFLL-DLDSHKSIVVSL 250
L W+Q SR D + A ++ ++ + FLL +LD+HKS + SL
Sbjct: 27 LASWIQTTLLITLSRIDGI--FMATKEDLESFKSFLLTELDAHKSSLTSL 74
>SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)
Length = 291
Score = 26.6 bits (56), Expect = 9.6
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = -2
Query: 400 TSGALEPTLP-VRSSLASCVPALVVGGEPCPHALRVRRGPSMRGDMCADHVQRYHYRLVR 224
+SG + P LP V PA + G + R++R ++ + + + HYRLVR
Sbjct: 7 SSGGIYPPLPSVCPPQTPTAPASICGDA---QSFRLQRICDIQAGLDNEIIALSHYRLVR 63
Query: 223 VQVKEKLAV 197
+ K AV
Sbjct: 64 KKYKRAFAV 72
>SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55)
Length = 2153
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 134 SLQQTAATVPTARDRCPTVSSCAPSIEGT 48
SL+ T+ D+ P VSS APS+ GT
Sbjct: 1263 SLKPDVQTLSIPSDKPPKVSSSAPSLMGT 1291
>SB_21520| Best HMM Match : Trypsin (HMM E-Value=0)
Length = 800
Score = 26.6 bits (56), Expect = 9.6
Identities = 12/45 (26%), Positives = 20/45 (44%)
Frame = -1
Query: 173 HHTVQGDRFWTLRSLQQTAATVPTARDRCPTVSSCAPSIEGTSAY 39
HH +G +L AT+PT + T + + G+S+Y
Sbjct: 583 HHATKGPATGVTTTLPTETATIPTTANGSSTKAPTTNPVMGSSSY 627
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,781,217
Number of Sequences: 59808
Number of extensions: 248012
Number of successful extensions: 1001
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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