Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_O08
         (452 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g71860.2 68414.m08304 protein tyrosine phosphatase 1 (PTP1) i...    28   2.6  
At1g71860.1 68414.m08305 protein tyrosine phosphatase 1 (PTP1) i...    28   2.6  
At4g13130.1 68417.m02045 DC1 domain-containing protein contains ...    27   4.5  
At3g04240.1 68416.m00448 O-linked N-acetyl glucosamine transfera...    27   4.5  
At3g58490.1 68416.m06519 phosphatidic acid phosphatase family pr...    27   5.9  
At2g40930.1 68415.m05052 ubiquitin-specific protease 5, putative...    27   5.9  
At2g05120.1 68415.m00539 expressed protein                             27   7.8  
At1g55020.1 68414.m06284 lipoxygenase (LOX1) identical to SP|Q06327    27   7.8  

>At1g71860.2 68414.m08304 protein tyrosine phosphatase 1 (PTP1)
           identical to protein tyrosine phosphatase 1 GI:3170531
           from [Arabidopsis thaliana]; contains Pfam profile:
           PF00102 protein-tyrosine phosphatase
          Length = 277

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -3

Query: 162 SGGSVLDASVASANCSHCSNRQRSLSNCFQLRSEHRGHVSLPDSCSH 22
           +G +  D S A +  S  S     L++C Q     RG +  PDS +H
Sbjct: 14  TGSTRFDLSSADSPPSKLSLSSDQLNHCHQALGVFRGKIQNPDSIAH 60


>At1g71860.1 68414.m08305 protein tyrosine phosphatase 1 (PTP1)
           identical to protein tyrosine phosphatase 1 GI:3170531
           from [Arabidopsis thaliana]; contains Pfam profile:
           PF00102 protein-tyrosine phosphatase
          Length = 340

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = -3

Query: 162 SGGSVLDASVASANCSHCSNRQRSLSNCFQLRSEHRGHVSLPDSCSH 22
           +G +  D S A +  S  S     L++C Q     RG +  PDS +H
Sbjct: 14  TGSTRFDLSSADSPPSKLSLSSDQLNHCHQALGVFRGKIQNPDSIAH 60


>At4g13130.1 68417.m02045 DC1 domain-containing protein contains
           Pfam protein PF03107 DC1 domain
          Length = 767

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 15/53 (28%), Positives = 20/53 (37%)
 Frame = -2

Query: 436 ARPRYRWNCWLCTSGALEPTLPVRSSLASCVPALVVGGEPCPHALRVRRGPSM 278
           ++PR R  C +C    L  T         C  AL  G    PH +R +    M
Sbjct: 586 SKPRERRRCGVCKKKPLSHTETFNCIEGECTFALCFGCATLPHEVRYKHDKHM 638


>At3g04240.1 68416.m00448 O-linked N-acetyl glucosamine transferase,
            putative similar to O-GlcNAc transferase, Homo sapiens
            [SP|O15294], Rattus norvegicus [SP|P56558]; contains Pfam
            profile PF00515: TPR Domain; identical to cDNA
            GI:18139886
          Length = 977

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 14   ALTCEHESGRLTCPLCSERNW-KQLDNDLWRL 106
            ALT E  + RLTCPL     W K L+   +++
Sbjct: 920  ALTKELRASRLTCPLFDTMRWVKNLERSYFKM 951


>At3g58490.1 68416.m06519 phosphatidic acid phosphatase family
           protein / PAP2 family protein similar to
           sphingosine-1-phosphate phosphohydrolase from [Mus
           musculus] GI:9623190, [Homo sapiens] GI:23345324;
           contains Pfam profile PF01569: PAP2 superfamily
          Length = 416

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -2

Query: 409 WLCTSGALEPTLPVRSSLASCVPALVVGGEP 317
           W+C S  L+ T   RS L   V   VVGG P
Sbjct: 26  WICASSYLKFTHKFRSLLQPWVARQVVGGVP 56


>At2g40930.1 68415.m05052 ubiquitin-specific protease 5, putative
           (UBP5) similar to GI:6648604
          Length = 924

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 50  CPLCSERNWKQLDNDLWRLEQWL 118
           CP C+ER       DLWRL + L
Sbjct: 791 CPQCNERRQASKKLDLWRLPEVL 813


>At2g05120.1 68415.m00539 expressed protein 
          Length = 1234

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 122  FAEATEASRTDPPEQYDALEDVIQDHREF 208
            FA+     R +P +   ++EDV+  H++F
Sbjct: 1175 FAQVLPLRRENPEDSTSSVEDVLMSHKDF 1203


>At1g55020.1 68414.m06284 lipoxygenase (LOX1) identical to SP|Q06327
          Length = 859

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +2

Query: 77  KQLDNDLWRLEQWLQFAE-ATEASRTDPPEQYDALEDVIQDHRE 205
           K  D   + L+   QF + A EA   D P+++D+ EDV++ + E
Sbjct: 268 KMSDFLAYALKAIAQFIQPALEAVFDDTPKEFDSFEDVLKIYEE 311


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,255,266
Number of Sequences: 28952
Number of extensions: 163305
Number of successful extensions: 665
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)