Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_O06
(510 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 47 1e-05
SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 4e-05
SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0) 36 0.015
SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.019
SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.73
SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 28 5.1
SB_3622| Best HMM Match : K167R (HMM E-Value=1.5) 28 5.1
SB_16588| Best HMM Match : Tropomyosin (HMM E-Value=3.3) 28 5.1
SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041) 27 6.8
SB_4939| Best HMM Match : 7tm_1 (HMM E-Value=0.049) 27 6.8
>SB_48525| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 569
Score = 46.8 bits (106), Expect = 1e-05
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 7/121 (5%)
Frame = +2
Query: 14 REGFTALVREMKQALNV------KPNMQLVISVLPN-VNSSIYFDVPSIINLVDIVNIQA 172
++ FT L +E+ A + +P + L +V ++V I ++D++N+ A
Sbjct: 265 KQRFTILCQELLDAFKLEAAQTNRPRLLLTAAVAAGKATIDKAYEVDKIGQILDLINLMA 324
Query: 173 FDYYTPERNPKEADYTAPIYAPQNRDPLQNADAAINYWIQNGAPTHKLVLGISTTGRTWK 352
+D P+ +TA + P + A YWI GAP K+ LG+ T GR +K
Sbjct: 325 YDL-RGMWEPETGHHTA-LEGPPGEE--LTVSFAAQYWIDKGAPASKIALGLGTYGRAFK 380
Query: 353 L 355
L
Sbjct: 381 L 381
>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 807
Score = 44.8 bits (101), Expect = 4e-05
Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 7/123 (5%)
Frame = +2
Query: 8 EHREGFTALVREM------KQALNVKPNMQLVISVLPNVNS-SIYFDVPSIINLVDIVNI 166
+ ++ FT L EM K A KP M L +V + ++V + ++D +N+
Sbjct: 532 QDKQHFTILCEEMLDAFKRKAADTDKPRMLLTAAVSAGHGTVDAAYEVHKLAGILDWINL 591
Query: 167 QAFDYYTPERNPKEADYTAPIYAPQNRDPLQNADAAINYWIQNGAPTHKLVLGISTTGRT 346
+D + P P +TA + P ++ A+ YW++ G P K+ LG++ G
Sbjct: 592 MTYDLHGPWE-PYTGHHTALVGPPGDK---LTVSYAVKYWMEKGMPCGKIALGMANYGHA 647
Query: 347 WKL 355
++L
Sbjct: 648 FEL 650
>SB_25657| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0)
Length = 829
Score = 36.3 bits (80), Expect = 0.015
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 11/91 (12%)
Frame = +2
Query: 122 FDVPSIINLVDIVNIQAFDYYTPERNPKEADYTAPIYAPQNRDPLQNADAAINYW----- 286
+D+ I +D +N+ +D + PK +TA P D L AI YW
Sbjct: 584 YDIEGISKPLDWINVMTYDLHGTWE-PKTGHHTA--MGPDG-DKL-TLPFAIWYWMNNRD 638
Query: 287 ------IQNGAPTHKLVLGISTTGRTWKLES 361
I+NG P +K+VLG+ T GR + LES
Sbjct: 639 TWEKPGIRNGMPANKIVLGLGTYGRAFGLES 669
>SB_38742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 438
Score = 35.9 bits (79), Expect = 0.019
Identities = 31/127 (24%), Positives = 61/127 (48%), Gaps = 7/127 (5%)
Frame = +2
Query: 2 ESEHREGFTALVREMKQALNV------KPNMQLVISVLPNVNS-SIYFDVPSIINLVDIV 160
E +HR FT L +E+ A KP + L +V + +++ ++ +D +
Sbjct: 150 EDKHR--FTLLCQELLAAFETEAANTGKPRLLLTAAVSAGETTVKNGYEISALGQALDWI 207
Query: 161 NIQAFDYYTPERNPKEADYTAPIYAPQNRDPLQNADAAINYWIQNGAPTHKLVLGISTTG 340
N+ ++D + + + A + + DPL A++ WI G P++K+ LGI G
Sbjct: 208 NLMSYDLHGDWEDT--TGHHAAMDSSTG-DPL-TVTHAVDLWIAGGMPSNKIALGIPLYG 263
Query: 341 RTWKLES 361
R++ L++
Sbjct: 264 RSFTLKT 270
>SB_12182| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1361
Score = 30.7 bits (66), Expect = 0.73
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = +3
Query: 294 MVRLPTNLSLVSAPLDVRGSSNPNGEISGVPPIHAD*GGEACSYYKGPRLIKGYPEICAK 473
M RLP+ ++ + +R S EI PP + G A YY+ P E+C +
Sbjct: 618 MKRLPSLYDCLTGCMPLRESFEKEEEIPWCPPTSSS-PGVARKYYQVPSATSELKELCRE 676
Query: 474 FINPTK 491
N K
Sbjct: 677 LFNAVK 682
>SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 628
Score = 27.9 bits (59), Expect = 5.1
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 286 DSKWCAYPQTCPWYQHHWTYVEA 354
D + C+YP T PW WT + +
Sbjct: 80 DERNCSYPTTGPWTTRPWTPISS 102
>SB_3622| Best HMM Match : K167R (HMM E-Value=1.5)
Length = 441
Score = 27.9 bits (59), Expect = 5.1
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = -3
Query: 220 SVVRLFGVTFRCII--VKCLDVDNVDQVYDAWDVKVNGAIYVWQNADN*LHIGFYIECLF 47
SV F T + +I + C DV+ V + + V VNG QNA+ + + F + F
Sbjct: 252 SVENRFSGTNKALIDAIVCQDVEEVKSILETEAVNVNG-----QNAEGFVPLEFAVMLGF 306
Query: 46 HLTYKSGEAF 17
H K +AF
Sbjct: 307 HHIAKMLQAF 316
>SB_16588| Best HMM Match : Tropomyosin (HMM E-Value=3.3)
Length = 430
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 229 LRTAEPRSSTKRRRCYKLLD-SKWCAYPQTCPWYQHHWTYVEAR 357
LR + PRS ++ + K+ ++P P +HHWT E R
Sbjct: 26 LRNSTPRSKARKPLQFTSPSHGKFKSFPVKSPVRRHHWTLEEER 69
>SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041)
Length = 942
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 259 KRRRCYKLLDSKWCAYPQTCP 321
K RCY L DSK C P P
Sbjct: 327 KAPRCYNLCDSKTCIIPTKAP 347
>SB_4939| Best HMM Match : 7tm_1 (HMM E-Value=0.049)
Length = 764
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -1
Query: 399 RRVSVELRKFHRLDSSFHVRPVVLIPRTSL 310
+R+ +++FH+LDS+ VR +L RT L
Sbjct: 287 KRIRRAVQEFHQLDSNLQVRQFLLETRTFL 316
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,518,940
Number of Sequences: 59808
Number of extensions: 354475
Number of successful extensions: 1007
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1123894172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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