Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_O04
         (566 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98877-4|CAB54473.2|  796|Caenorhabditis elegans Hypothetical pr...    25   0.74 
Z98877-5|CAD56616.1|  731|Caenorhabditis elegans Hypothetical pr...    25   0.75 
U88176-2|AAO91740.3|  550|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z68295-1|CAA92587.1|  325|Caenorhabditis elegans Hypothetical pr...    28   4.1  
U28928-7|AAA68339.1|  665|Caenorhabditis elegans Peroxisomal mem...    28   4.1  
Z69716-4|CAA93528.1|  480|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>Z98877-4|CAB54473.2|  796|Caenorhabditis elegans Hypothetical
           protein Y69H2.3b protein.
          Length = 796

 Score = 25.0 bits (52), Expect(2) = 0.74
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
 Frame = +2

Query: 209 CATLKCSCGMNPSRTVIGLRSA-CPMEMRC 295
           CAT++CS G      ++    A CP    C
Sbjct: 381 CATMRCSAGTTCQEALVKCAKAPCPSHAAC 410



 Score = 24.2 bits (50), Expect(2) = 0.74
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 191 NVYHTKCATLKCSCG 235
           N+  T C+T+KCS G
Sbjct: 335 NIQITPCSTMKCSAG 349


>Z98877-5|CAD56616.1|  731|Caenorhabditis elegans Hypothetical
           protein Y69H2.3c protein.
          Length = 731

 Score = 25.0 bits (52), Expect(2) = 0.75
 Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
 Frame = +2

Query: 209 CATLKCSCGMNPSRTVIGLRSA-CPMEMRC 295
           CAT++CS G      ++    A CP    C
Sbjct: 316 CATMRCSAGTTCQEALVKCAKAPCPSHAAC 345



 Score = 24.2 bits (50), Expect(2) = 0.75
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 191 NVYHTKCATLKCSCG 235
           N+  T C+T+KCS G
Sbjct: 270 NIQITPCSTMKCSAG 284


>U88176-2|AAO91740.3|  550|Caenorhabditis elegans Hypothetical
           protein F18F11.4 protein.
          Length = 550

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
 Frame = +1

Query: 1   RRSLSEDDKYSYFTEDVDLNTYMYYLHMN--YPYWMTDEVYGLNKERQGEILMYANSQLL 174
           R  LSED  + + T ++  +  +YYLH+     + +   V   N      +LM  N+++L
Sbjct: 394 RNELSEDKTHQHTTIEIYDSLNLYYLHLRRFERHLLNPPVVKYNNRFNSSLLMKLNTKML 453

Query: 175 ARL--RME 192
            +   RME
Sbjct: 454 DQFTERME 461


>Z68295-1|CAA92587.1|  325|Caenorhabditis elegans Hypothetical
           protein C07C7.1 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = -1

Query: 545 SIFLNIVIIWNIWASSLATFMPPRISLASISTSSGFFR---LIMVPSRRSIL 399
           +IFLN+  I N W    + F+P + +   +++ S  F    L+++P  R I+
Sbjct: 54  TIFLNVSFISNFWIHLCSPFLPTQKNNKILNSESKIFAFVVLLLLPHLRLII 105


>U28928-7|AAA68339.1|  665|Caenorhabditis elegans Peroxisomal
           membrane protein relatedprotein 1 protein.
          Length = 665

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 298 VRQNNFVPVTSENLKLKMLLD-DVEQMIREGILTGKIERRDG 420
           +R     P TS ++K+K + D D+EQM+    LT  +ER  G
Sbjct: 525 LRDQVIYPDTSFDMKMKGMSDKDLEQMLENVQLTNILEREGG 566


>Z69716-4|CAA93528.1|  480|Caenorhabditis elegans Hypothetical
           protein C04B4.4 protein.
          Length = 480

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +1

Query: 187 MERLSHKMCDIKMFMWNEPVKNGYWPKIRLPNGDEMPVRQNNFVP 321
           ++  S+KM D+K F  N+P K+ +    +   G   PV+  N  P
Sbjct: 392 LKMTSNKMLDLKGFSMNDPPKSRFAIANQNSEGRASPVQPKNTNP 436


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,494,114
Number of Sequences: 27780
Number of extensions: 255668
Number of successful extensions: 735
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)