Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_O03
         (618 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77270.1 68414.m08999 expressed protein                             31   0.46 
At5g29624.1 68418.m03640 DC1 domain-containing protein contains ...    29   1.9  
At5g54020.1 68418.m06719 expressed protein                             29   2.5  
At4g01575.1 68417.m00205 serine protease inhibitor, Kazal-type f...    29   3.3  
At3g61980.1 68416.m06961 serine protease inhibitor, Kazal-type f...    29   3.3  
At5g54050.1 68418.m06722 DC1 domain-containing protein                 28   5.7  
At5g42190.1 68418.m05135 E3 ubiquitin ligase SCF complex subunit...    27   10.0 
At4g14980.1 68417.m02302 DC1 domain-containing protein contains ...    27   10.0 

>At1g77270.1 68414.m08999 expressed protein
          Length = 682

 Score = 31.5 bits (68), Expect = 0.46
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = +2

Query: 326 TRYISDRRCANIRRNSAAVVMRVRKKLKTGL-RIRRQDLPQPVPLVLREGQDAQRFENRE 502
           TRY+ D +  N R + +  + R  K+LKT + R     + +  P+V  + +D QR +NRE
Sbjct: 390 TRYVRDSQEKNTRNDESQTIFRASKRLKTEIGRADHNSISKTNPVV--KTKDIQR-KNRE 446


>At5g29624.1 68418.m03640 DC1 domain-containing protein contains
           Pfam PF03107: DC1 domain
          Length = 488

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 40  QFSRQKQNCGGMFRDATLDDTLCDDHLAFI-CEKDPKKLQ 156
           Q SR+ Q C     D  L+ T+CDD+  F+ C   P+K++
Sbjct: 418 QSSRRCQACDREIHDDPLNCTVCDDYSLFMRCATLPRKVK 457


>At5g54020.1 68418.m06719 expressed protein 
          Length = 556

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 40  QFSRQKQNCGGMFRDATLDDTLCDDH-LAFICEKDPKKLQ 156
           Q SRQ Q CG       L  T+CDD+ L   C   P+K++
Sbjct: 406 QSSRQCQACGTKIDHDPLSCTVCDDYSLCMRCTTLPRKVK 445


>At4g01575.1 68417.m00205 serine protease inhibitor, Kazal-type
           family protein contains Pfam domain PF00050: Kazal-type
           serine protease inhibitor domain
          Length = 144

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +3

Query: 378 PSSCA--CARNLRPVCGSDGKTYHNQCLLYCERDKTHSDLKIVKEGTCE 518
           P+SC   C R   PVCG D  TY   C      D     +++VK+G C+
Sbjct: 68  PASCPVQCFRP-DPVCGEDSVTYWCGC-----ADALCHGVRVVKQGACD 110


>At3g61980.1 68416.m06961 serine protease inhibitor, Kazal-type
           family protein contains Pfam domain PF00050: Kazal-type
           serine protease inhibitor domain
          Length = 117

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 411 PVCGSDGKTYHNQCLLYCERDKTHSDLKIVKEGTCE 518
           PVCG+DG TY   C      D      ++VK+G C+
Sbjct: 53  PVCGTDGVTYWCGC-----PDAACHGARVVKKGACD 83


>At5g54050.1 68418.m06722 DC1 domain-containing protein 
          Length = 580

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 40  QFSRQKQNCGGMFRDATLDDTLCDDH-LAFICEKDPKKLQ 156
           Q SR+ Q C    +D  L+ T+CD++ L   C   P+K++
Sbjct: 429 QSSRRCQACNKEIKDDPLNCTVCDEYSLCMRCATLPRKVK 468


>At5g42190.1 68418.m05135 E3 ubiquitin ligase SCF complex subunit
           SKP1/ASK1 (At2) / UFO-binding protein (UIP2) E3
           ubiquitin ligase; skp1b; identical to UIP2 GI:3719211
           from [Arabidopsis thaliana]; contains Pfam profiles
           PF01466: Skp1 family, dimerisation domain and
           PF03931:Skp1 family, tetramerisation domain; identical
           to cDNA UFO binding protein UIP2 mRNA, partial cds
           GI:3719210
          Length = 171

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 376 CRRHARAQET*DRSADQTARLTTTSAS 456
           C+RH  A E  + +AD  A  TTT+ +
Sbjct: 60  CKRHVEAAEKSETTADAAAATTTTTVA 86


>At4g14980.1 68417.m02302 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 470

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 46  SRQKQNCGGMFRDATLDDTLCDDH-LAFICEKDPKKLQ 156
           S++ Q CG    D  L+ T+CDD+ L   C   P+K++
Sbjct: 319 SKRCQACGTETDDNLLNCTVCDDYALCMKCATLPRKVK 356


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,280,872
Number of Sequences: 28952
Number of extensions: 226595
Number of successful extensions: 596
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)