Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_O02
         (545 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0079 - 554936-554977,555108-555297,555384-555430,556039-55...    29   3.2  

>08_01_0079 -
           554936-554977,555108-555297,555384-555430,556039-556139,
           556223-556271,556432-556494,556602-556695,556822-556924,
           557719-557791,557872-557984,558068-558149,558386-558913,
           559015-559098,560156-560305,561021-561191,561759-561809,
           562601-562738,562823-562894,563236-563391,563681-563839,
           564080-564180,564577-564829
          Length = 939

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +3

Query: 477 NNLVTSFNRSIGWNYLN 527
           N+LV  F+R +GWN LN
Sbjct: 917 NSLVKEFSRKVGWNLLN 933


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,706,909
Number of Sequences: 37544
Number of extensions: 165965
Number of successful extensions: 225
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)