Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_O02
         (545 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16639| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.27 
SB_20861| Best HMM Match : RVT_1 (HMM E-Value=1.7e-07)                 27   7.6  
SB_17711| Best HMM Match : HECT (HMM E-Value=4.9)                      27   7.6  
SB_19936| Best HMM Match : fn3 (HMM E-Value=5.8e-20)                   27   7.6  

>SB_16639| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +3

Query: 183 YTFYIILVNMLCITSTIIQIVCYRCIHLQFIDKKTPLSKFLEEFVRQ 323
           Y F + LV M      I+Q+VCY C+ +  +DKK  + +   E + Q
Sbjct: 194 YLFALYLVIMFIALPLILQVVCYACV-IHTLDKKDFIDRHGNEALAQ 239


>SB_20861| Best HMM Match : RVT_1 (HMM E-Value=1.7e-07)
          Length = 370

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 22/90 (24%), Positives = 38/90 (42%)
 Frame = +3

Query: 138 HLYKTIYKNKYILNSYTFYIILVNMLCITSTIIQIVCYRCIHLQFIDKKTPLSKFLEEFV 317
           HL+K+I     +L ++T+ + +        T IQ    RC   ++I     + K LEE  
Sbjct: 257 HLFKSI-----VLPNFTYGLSVFGASDSDLTNIQNFLERCFKRKYISNIVNIRKLLEEAD 311

Query: 318 RQLMXXXXXXXXXXXXKMNPHFSR*RYNLR 407
           +++             K+ P     +YNLR
Sbjct: 312 KKIYRTRLDQPEYPLSKILPKKKDQKYNLR 341


>SB_17711| Best HMM Match : HECT (HMM E-Value=4.9)
          Length = 310

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 22/90 (24%), Positives = 38/90 (42%)
 Frame = +3

Query: 138 HLYKTIYKNKYILNSYTFYIILVNMLCITSTIIQIVCYRCIHLQFIDKKTPLSKFLEEFV 317
           HL+K+I     +L ++T+ + +        T IQ    RC   ++I     + K LEE  
Sbjct: 197 HLFKSI-----VLPNFTYGLSVFGASDSDLTNIQNFLERCFKRKYISNIVNIRKLLEEAD 251

Query: 318 RQLMXXXXXXXXXXXXKMNPHFSR*RYNLR 407
           +++             K+ P     +YNLR
Sbjct: 252 KKIYRTRLDQPEYPLSKILPKKKDQKYNLR 281


>SB_19936| Best HMM Match : fn3 (HMM E-Value=5.8e-20)
          Length = 365

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +3

Query: 156 YKNKYILNSYTFYIILVNMLCITSTIIQIVCYRCIH 263
           +K  YIL+ + ++  +  M C    I   +  RC+H
Sbjct: 175 FKRSYILHLHEYFQTMYKMACAEYYIFITISRRCVH 210


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,655,152
Number of Sequences: 59808
Number of extensions: 238083
Number of successful extensions: 419
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)