Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_O02
         (545 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     26   0.29 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    24   0.88 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   6.2  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   6.2  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    21   8.2  

>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 25.8 bits (54), Expect = 0.29
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 456 IIRKHLKKR*MKSVTPFSSYSVTGRNVGSF 367
           I+RK  K+  M+ + PF  Y + G N+ +F
Sbjct: 139 ILRK--KREFMQKIWPFKEYQMNGNNITNF 166


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = +1

Query: 244 YVTAVYIYNLLIKKHHSVN 300
           + T +  YN+L+++H+S+N
Sbjct: 228 FTTDLLSYNILLRRHYSMN 246


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 162 FYKLFYINVI*YTRNKIILNYFHHIHM 82
           F  LF +     TR K+   YFHH ++
Sbjct: 19  FGVLFVLFSFLRTRTKLQPTYFHHTYI 45


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 162 FYKLFYINVI*YTRNKIILNYFHHIHM 82
           F  LF +     TR K+   YFHH ++
Sbjct: 19  FGVLFVLFSFLRTRTKLQPTYFHHTYI 45


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 236 NYRGSNTQHVNKYNVK 189
           NY+ SN  + N YN K
Sbjct: 88  NYKYSNYNNYNNYNKK 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,351
Number of Sequences: 438
Number of extensions: 2753
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)