Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_O01
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos...    29   0.41 
SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces ...    27   1.3  
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch...    26   3.8  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    26   3.8  
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   5.1  
SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   5.1  
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc...    25   6.7  
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    25   6.7  
SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces ...    25   8.9  

>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
           Plc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 899

 Score = 29.1 bits (62), Expect = 0.41
 Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -2

Query: 164 HSDLPKKI-SVPKFLHSPHSSLFEHQFHLNPRPLSLRINLLFVL 36
           HS L K+  S+  FL +  +S  E++FH     LSL++NLL  L
Sbjct: 74  HSTLRKRSNSLSSFLSTKSTSASENKFHGGLNWLSLKLNLLLRL 117


>SPCC330.09 |||rRNA processing protein Enp2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 634

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 368 SDMWTRXLHSTNHRQSNFHPQSP*HLLPRHP 276
           SD WT+ +H    R  +FH Q   H   R P
Sbjct: 105 SDDWTKSVHLQTDRTVDFHSQGGIHYSTRIP 135


>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 185 RWGCMLCRLWAKELSEIAP 241
           R+GC++CR   K+  E+ P
Sbjct: 18  RYGCLICRSMRKKCDEVHP 36


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 232 FAQLFSPKPAQHTPPSTK 179
           F++LF PKP +  PP  K
Sbjct: 191 FSELFKPKPVKLAPPKKK 208


>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 164 HSDLPKKISVPKFLHSPHSSLFEHQ 90
           HS     + +P FLHSP S   E Q
Sbjct: 165 HSPAASNLPIPTFLHSPVSEKAEWQ 189


>SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 94  CSKSEECGEWRNFGTEIFLGRSECGNYLLSSMGVY 198
           C   E  G+ ++    I++  +E  NYLL+  G Y
Sbjct: 96  CLIQESDGDAKDVARSIYITTAEFRNYLLTEKGFY 130


>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 229 AQLFSPKPAQHTPPSTKE 176
           A +F P P    PPST+E
Sbjct: 126 ASMFGPNPENPVPPSTEE 143


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -2

Query: 164 HSDLPKKISVPKFLHSP 114
           H+D  K++S+PK+  SP
Sbjct: 122 HTDYVKRVSIPKYSKSP 138


>SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = +2

Query: 326 DGDLYYVDXVSTYQKLGF--KRFNVITILTSLFWKQSR 433
           DG  YY     TY+++GF    F  +T    LF +  +
Sbjct: 159 DGSHYYAALRETYEEIGFLPNFFTYLTTFPPLFTRDEK 196


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,257,235
Number of Sequences: 5004
Number of extensions: 46613
Number of successful extensions: 149
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)