Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_O01
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0602 + 9759055-9759223,9759305-9759455,9759548-9759593,975... 48 3e-06
03_05_1002 - 29594462-29594581,29594686-29594781,29594857-295949... 33 0.14
11_06_0227 + 21475954-21476771,21477215-21479144,21479292-214794... 29 2.2
01_01_1197 - 9630506-9630681,9630774-9630805,9630894-9630988,963... 29 2.2
07_03_1299 + 25598869-25600006,25600718-25600773 29 2.9
03_02_0948 - 12645972-12646010,12646612-12646750,12646846-126470... 28 3.9
02_04_0076 - 19486360-19488723 28 3.9
04_01_0368 + 4839043-4839483 28 5.1
03_06_0467 + 34145126-34145187,34145403-34145759,34146161-341462... 27 6.8
>03_02_0602 +
9759055-9759223,9759305-9759455,9759548-9759593,
9759974-9760033,9760519-9760555,9761268-9761347,
9761413-9761516,9761613-9761673,9762962-9763019,
9763866-9763918,9764357-9765320,9766131-9766185,
9767223-9768786
Length = 1133
Score = 48.4 bits (110), Expect = 3e-06
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Frame = +2
Query: 119 NGEISELKSFWEDQNAAIIFFRRWGCMLCRLWAKELSEIAPILKNNNIK--LIGVGVEEA 292
+G+ + W+D+ A + F R +GC+LCR A L+ ++ + LIG G E
Sbjct: 83 SGKAVPVVDLWKDRKAIVAFARHFGCVLCRKRADLLAAKQDAMEAAGVALVLIGPGTVEQ 142
Query: 293 GAKDFVDGNYFDGDLYYVDXVSTYQKLGFKRFNVITILTSLFWKQS 430
AK F D F G++Y S+Y L F F + + T + Q+
Sbjct: 143 -AKAFYDQTKFKGEVYADPSHSSYNALEF-AFGLFSTFTPSLYPQA 186
>03_05_1002 -
29594462-29594581,29594686-29594781,29594857-29594916,
29595574-29595618,29595956-29596070,29596200-29596246,
29596529-29596822
Length = 258
Score = 33.1 bits (72), Expect = 0.14
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Frame = +2
Query: 89 IGAQKVKNVANGEISELKSFWEDQN---AAIIFFRRWGCMLCRLWAKELSEIAPILKNNN 259
+G + + A GE + W DQN A + R +GC C A L + +
Sbjct: 74 LGGVAIYSAATGEPVLFRDLW-DQNEGMAVVALLRHFGCPCCWELASVLRDTKERFDSAG 132
Query: 260 IKLIGVGV 283
+KLI VGV
Sbjct: 133 VKLIAVGV 140
>11_06_0227 + 21475954-21476771,21477215-21479144,21479292-21479426,
21480287-21480392,21480560-21480576
Length = 1001
Score = 29.1 bits (62), Expect = 2.2
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = +2
Query: 284 EEAGAKDFVDGNYFDGDLYYVD 349
EE AKD VDGN DG+ Y D
Sbjct: 938 EEISAKDHVDGNCDDGNSAYTD 959
>01_01_1197 - 9630506-9630681,9630774-9630805,9630894-9630988,
9631569-9631642,9631732-9631843,9631967-9632030,
9632210-9632275,9632396-9632526,9632884-9633021,
9633115-9633227,9633306-9633471,9633588-9633701,
9633791-9633853,9633953-9634060,9634143-9634259,
9634343-9634505,9634646-9634743,9634852-9634949,
9635054-9635190,9635309-9635530,9635625-9635830,
9636758-9636845,9638085-9638668
Length = 1054
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = -3
Query: 319 ISIHKVLSTC-FLDTH-SNQFNVIIFQYRRYFAQLFSPKPAQHTPPSTKEDN 170
I + +++ C FLD + S +F +I+ Q + + + F P + PP T DN
Sbjct: 885 IELDQIIEACKFLDENWSPKFTLIVAQ-KNHHTKFFVPGSQNNVPPGTVVDN 935
>07_03_1299 + 25598869-25600006,25600718-25600773
Length = 397
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +2
Query: 236 APILKNNNIKLIGVGVEEAGAKDFVDGNYFDGDLYYVDXVSTYQKLG 376
AP L+ +++ + G A + VD FDGD + V+ KLG
Sbjct: 87 APFLERHHVAVFRAGKLRELADESVDAVLFDGDAVQLGAVNRVLKLG 133
>03_02_0948 -
12645972-12646010,12646612-12646750,12646846-12647090,
12647184-12647505,12647781-12648005,12648185-12648351,
12648428-12648544,12648989-12649162,12649372-12649467,
12649624-12649840,12650267-12650385,12650478-12650670,
12651212-12651363,12651485-12651611,12651731-12651828
Length = 809
Score = 28.3 bits (60), Expect = 3.9
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +2
Query: 275 VGVEEAGAKDFVDGNYFDGDLYYVDXVSTYQKLGFKRFNV 394
+ E G DF+ GNY DG+L V + +Y K+G + N+
Sbjct: 398 IAAELQGTPDFIIGNYSDGNL--VASLLSY-KMGITQCNI 434
>02_04_0076 - 19486360-19488723
Length = 787
Score = 28.3 bits (60), Expect = 3.9
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = +1
Query: 355 VHISEVGFQTVQCDYYFDVTILETIARR---TF*RQRHGFERRLSGGLGADRW 504
VH ++ ++ +CD Y +IL I RR + R+ HG+ + GL +D++
Sbjct: 293 VHFRDLMYKCAECDEYTLGSILHVITRRCAFDYGREIHGY--LIRAGLDSDKY 343
>04_01_0368 + 4839043-4839483
Length = 146
Score = 27.9 bits (59), Expect = 5.1
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 457 HGFERRLSGGLGADRW 504
H E R+SGG+GAD+W
Sbjct: 101 HWGEARMSGGVGADQW 116
>03_06_0467 +
34145126-34145187,34145403-34145759,34146161-34146248,
34146361-34146506,34146892-34146936,34147030-34147133,
34147225-34147361,34147651-34147761,34148455-34148664
Length = 419
Score = 27.5 bits (58), Expect = 6.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 506 HHRSAPNPPDNRRSNPCLCL 447
HH+S P PP ++R P CL
Sbjct: 324 HHQSTPLPPQHQRLYPSHCL 343
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,579,042
Number of Sequences: 37544
Number of extensions: 294804
Number of successful extensions: 920
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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