Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_O01
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)                   31   0.43 
SB_32547| Best HMM Match : Epimerase (HMM E-Value=3.2e-08)             30   0.98 
SB_25311| Best HMM Match : Tubulin (HMM E-Value=0)                     30   0.98 
SB_8472| Best HMM Match : TatC (HMM E-Value=1.4)                       28   4.0  
SB_23559| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  

>SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)
          Length = 492

 Score = 31.5 bits (68), Expect = 0.43
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +2

Query: 215 AKELSEIAPILKNNNIKLIGVGVEEAGAKDFVDGNYFDGDLYY 343
           A EL+ + P L    + LIGV  E+ G K+F    Y +G++Y+
Sbjct: 40  AAELASLRPELDKLGVPLIGVVHEKKGVKEFKP--YLNGEIYF 80


>SB_32547| Best HMM Match : Epimerase (HMM E-Value=3.2e-08)
          Length = 327

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = -3

Query: 391 IEPFETQLLICGHVI-YIVQITVKVISIHKVLSTCFLDTHSNQFNVIIFQYRRYFAQLFS 215
           ++P   Q ++  H I +IV  +  + ++ +   T  L  +   F+ II   R+Y  +LFS
Sbjct: 82  LDPQSLQSIVVNHNIDWIVHFSAILSAVGEQNVTQALQVNIEGFHNIIETCRKYNLRLFS 141

Query: 214 PKPAQHTPPSTKEDN 170
           P       P T  DN
Sbjct: 142 PSTIGAFGPETPMDN 156


>SB_25311| Best HMM Match : Tubulin (HMM E-Value=0)
          Length = 629

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 245 LKNNNIKLIGV-GVEEAGAKDFVDGNYFDGDLYYVDXVSTYQK 370
           +K NNI+ IG   +  A  K  V GNYF  D    D +S YQ+
Sbjct: 230 IKRNNIQNIGAFRLASALRKWGVTGNYFSADSNLNDLISEYQQ 272


>SB_8472| Best HMM Match : TatC (HMM E-Value=1.4)
          Length = 476

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 121 IRHILHFLSTNFI*IHGHYRCVLICCS 41
           +RH+ H L+TN + ++G  RC   C S
Sbjct: 176 LRHLRHLLATNKLALYGLLRCDKACSS 202


>SB_23559| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 281

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 170 IIFFRRWGCMLCRLWAKELSEIAP 241
           ++ F   G ++CRLW +EL E  P
Sbjct: 92  VLLFCLVGYVICRLWPRELPEYEP 115


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,700,872
Number of Sequences: 59808
Number of extensions: 337029
Number of successful extensions: 853
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)