Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_O01
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37240.1 68415.m04569 expressed protein weak similarity to fm...    51   4e-07
At5g65840.1 68418.m08285 expressed protein                             40   0.001
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID...    29   1.4  
At1g17230.1 68414.m02099 leucine-rich repeat family protein / pr...    29   2.5  
At2g27040.1 68415.m03249 PAZ domain-containing protein / piwi do...    28   3.2  
At3g01180.1 68416.m00023 glycogen synthase, putative similar to ...    28   4.3  
At5g57770.1 68418.m07221 expressed protein                             27   7.5  
At1g49980.1 68414.m05609 UMUC-like DNA repair family protein low...    27   7.5  
At5g46460.1 68418.m05722 pentatricopeptide (PPR) repeat-containi...    27   9.9  
At1g65610.1 68414.m07442 endo-1,4-beta-glucanase, putative / cel...    27   9.9  
At1g21570.1 68414.m02697 zinc finger (CCCH-type) family protein ...    27   9.9  

>At2g37240.1 68415.m04569 expressed protein weak similarity to fmHP
           (GI:22902096) [Takifugu rubripes]
          Length = 248

 Score = 51.2 bits (117), Expect = 4e-07
 Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
 Frame = +2

Query: 101 KVKNVANGEISELKSFWEDQNAAIIFFRRWGCMLCRLWAKELSEIAPILKNNNIKLIGVG 280
           KV ++   EI  +   W+D+ A + F R +GC+LCR  A  L+E   ++  + + L+ +G
Sbjct: 75  KVLDLRGNEIP-ISDLWKDRKAVVAFARHFGCVLCRKRAAYLAEKKDVMDASGVALVLIG 133

Query: 281 VEEAG-AKDFVDGNYFDGDLYYVDXVSTYQKLGF 379
                 A  FV+   F G++Y     ++Y+ L F
Sbjct: 134 PGSIDQANTFVEQTKFKGEVYADPNHASYEALEF 167


>At5g65840.1 68418.m08285 expressed protein
          Length = 275

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = +2

Query: 77  DLNEIGAQKVKNVANGEISELKSFWEDQN--AAIIFFRRWGCMLCRLWAKELSEIAPILK 250
           D+ EI        A+G+  +    W+ ++  AA++  R +GC+ C   A  L E  P   
Sbjct: 87  DIGEILGDVSIFTASGQRVQFSDLWDQKDGIAAVVLLRHFGCVCCWELATALKEAKPRFD 146

Query: 251 NNNIKLIGVGV 283
              +KLI VGV
Sbjct: 147 AAGVKLIAVGV 157


>At1g67120.1 68414.m07636 midasin-related similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q12019)
            [Saccharomyces cerevisiae]; similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
            sapiens]; contains Prosite PS00017: ATP/GTP-binding site
            motif A (P-loop)
          Length = 5336

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 17/75 (22%), Positives = 35/75 (46%)
 Frame = +2

Query: 200  LCRLWAKELSEIAPILKNNNIKLIGVGVEEAGAKDFVDGNYFDGDLYYVDXVSTYQKLGF 379
            LC+L ++    I  +L ++ +   GVG +    + F+D     GD Y  + ++  + +  
Sbjct: 4394 LCKLLSESFGSIEQLLNSSGVLSAGVGDQLKQLQAFLDLLLSFGDCYLKEFLAISKTVSL 4453

Query: 380  KRFNVITILTSLFWK 424
                + ++L  LF K
Sbjct: 4454 ITHVLASVLADLFTK 4468


>At1g17230.1 68414.m02099 leucine-rich repeat family protein /
           protein kinase family protein contains protein kinase
           domain, Pfam:PF00069; contains leucine-rich repeats,
           Pfam:PF00560
          Length = 1133

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = +1

Query: 124 RNFGTEIFLGRSECGNYLLSSMG---VYAVQALG*RVERNSAD 243
           RNF  ++ LGR  CG    + M    V AV+ L  R E  S+D
Sbjct: 797 RNFSEDVVLGRGACGTVYKAEMSGGEVIAVKKLNSRGEGASSD 839


>At2g27040.1 68415.m03249 PAZ domain-containing protein / piwi
           domain-containing protein similar to SP|Q9QZ81
           Eukaryotic translation initiation factor 2C 2 {Rattus
           norvegicus}; contains Pfam profiles PF02171: Piwi
           domain, PF02170: PAZ domain
          Length = 924

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -3

Query: 319 ISIHKVLSTC-FLDTHSNQFNVIIFQYRRYFAQLFSPKPAQHTPPSTKEDN 170
           I + +++  C  LD + N   +++   + +  + F P   ++ PP T  DN
Sbjct: 755 IELDQIIEACKLLDANWNPKFLLLVAQKNHHTKFFQPTSPENVPPGTIIDN 805


>At3g01180.1 68416.m00023 glycogen synthase, putative similar to
           glycogen synthase Q43847 from [Solanum tuberosum]
          Length = 792

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 20/80 (25%), Positives = 31/80 (38%)
 Frame = +2

Query: 155 DQNAAIIFFRRWGCMLCRLWAKELSEIAPILKNNNIKLIGVGVEEAGAKDFVDGNYFDGD 334
           D N A I    W   L  ++ K       I+K     L+   +   G     D +Y D  
Sbjct: 430 DGNLAFIA-NDWHTALLPVYLKAYYRDHGIMKYTRSVLVIHNIAHQGRGPVDDFSYVDLP 488

Query: 335 LYYVDXVSTYQKLGFKRFNV 394
            +Y+D    Y  +G + FN+
Sbjct: 489 SHYLDSFKLYDPVGGEHFNI 508


>At5g57770.1 68418.m07221 expressed protein 
          Length = 409

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +1

Query: 7   FWNFIIVFFYNTNNKLIRNDNGRGF 81
           FW F +V  Y  NN    N N  GF
Sbjct: 123 FWPFRLVLIYQINNIGFLNQNNNGF 147


>At1g49980.1 68414.m05609 UMUC-like DNA repair family protein low
           similarity to DNA polymerase kappa [Mus musculus]
           GI:14279087; contains Pfam profile PF00817:
           ImpB/MucB/SamB family
          Length = 785

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 323 FDGDLYYVDXVSTYQKLGFKRFNVIT 400
           +D DLY+   V  Y+++GF+  N ++
Sbjct: 720 YDSDLYHSKLVRFYRRIGFEEVNEVS 745


>At5g46460.1 68418.m05722 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 697

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -3

Query: 148 KRFQFRNFSIRHILH 104
           +RF+FR FSI H++H
Sbjct: 8   QRFRFRAFSISHVIH 22


>At1g65610.1 68414.m07442 endo-1,4-beta-glucanase, putative /
           cellulase, putative similar to endo-1,4-beta-glucanase
           GI:2065530 from [Lycopersicon esculentum]
          Length = 623

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -2

Query: 509 PHHRSAPNPPDN 474
           P H+SAP PPDN
Sbjct: 105 PRHKSAPPPPDN 116


>At1g21570.1 68414.m02697 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 470

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 13/59 (22%), Positives = 27/59 (45%)
 Frame = +1

Query: 76  GFK*NWCSKSEECGEWRNFGTEIFLGRSECGNYLLSSMGVYAVQALG*RVERNSADTEK 252
           GF   +CS+ +EC +  ++   +F     C   L   +     Q+ G + +R +  ++K
Sbjct: 330 GFLKGYCSEGDECRKKHSYNCPVFEATGSCSQGLKCKLHHPKNQSKGRKRKRTNEPSQK 388


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,806,200
Number of Sequences: 28952
Number of extensions: 242305
Number of successful extensions: 741
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)