Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_N24
         (408 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha...    25   6.0  
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    24   7.9  
SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr 1|||...    24   7.9  

>SPBC36.09 |sap61||U2 snRNP-associated protein
           sap61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 180 GLSGWYSHHCE 212
           GL GWYSH+ E
Sbjct: 221 GLPGWYSHNAE 231


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = +1

Query: 79  INQSNGVIEPSKATLVYDEQPCNAFGGKCTEAETDCPAGTHITAKGLCPSQQ 234
           IN    V+  S   LVY E   +  GG+  E +       ++T+  L P Q+
Sbjct: 574 INDMQIVVALSNGELVYFEMSDDVEGGQLNEYQERKTLTANVTSLALGPVQE 625


>SPAC3A11.04 |||siepin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 228 TWTKTFRSDVSTSRTVRFSFGTLPAERITRLF 133
           T+ K+F S   T+ +VRFS    PA+ I +++
Sbjct: 142 TFAKSFNS--ITTLSVRFSVKNTPAQAIVKIY 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,612,295
Number of Sequences: 5004
Number of extensions: 31252
Number of successful extensions: 59
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)