Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_N22
         (152 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    25   1.0  
SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein L34|Sc...    25   1.8  
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch...    24   3.1  
SPCC1223.12c |meu10||GPI anchored cell surface protein |Schizosa...    23   5.5  
SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein L34|S...    23   7.2  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    23   7.2  
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos...    23   7.2  
SPAC637.11 |suv3||ATP-dependent RNA helicase Suv3|Schizosaccharo...    22   9.5  

>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 113 NASRKIWNSKRKY 151
           NA RK+WN +R+Y
Sbjct: 36  NAIRKLWNERRRY 48


>SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein
           L34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 111

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 31  SLNRKKLELLGGTCDLAIAVKDAIFVQECVPENLELKKKV 150
           S N+KK++   G C  A AVKD I     + E   +K+K+
Sbjct: 66  SHNQKKVQRAYGGCLSANAVKDRIVRAFLIEEQKIVKQKL 105


>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 754

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 94  DAIFVQECVPENLELKKK 147
           DA  V E +P N+ELKKK
Sbjct: 64  DADAVDEEMPSNVELKKK 81


>SPCC1223.12c |meu10||GPI anchored cell surface protein
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 416

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 25  LPSLNRKKLELLGGTCDLA 81
           L SLN K+LE +GGT  +A
Sbjct: 260 LTSLNFKQLESIGGTFMIA 278


>SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein
           L34|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 112

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +1

Query: 31  SLNRKKLELLGGTCDLAIAVKDAIFVQECVPENLELKKKV 150
           S N+K ++   G C  A AVKD I     + E   +K+K+
Sbjct: 66  SHNKKTVQRAYGGCLSANAVKDRIVRAFLIEEQKIVKQKL 105


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 97  HP*RQSLNHRYLPTIPTFSDLNLEAM 20
           HP   + + R LP+IPT  +L  +++
Sbjct: 122 HPASDTSSWRELPSIPTLEELTSKSV 147


>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/37 (24%), Positives = 17/37 (45%)
 Frame = -3

Query: 120 DAFLYENRILNGNR*ITGTSQQFQLFPI*TWKP*RHA 10
           D  ++   ++ G   +  T +  QL+    WKP + A
Sbjct: 230 DHLMHITHVIRGEEWVPSTIKHIQLYEAFGWKPPKFA 266


>SPAC637.11 |suv3||ATP-dependent RNA helicase
           Suv3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 647

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 31  SLNRKKLELLGGTCDLAIAVKDAIFVQECVPENLELKKKV 150
           SLN K  EL  G C +A + K+   ++  + + L  K  V
Sbjct: 326 SLNGKLSELKDGDCVVAFSRKNIFTLKSKIDQALGKKSAV 365


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 678,642
Number of Sequences: 5004
Number of extensions: 9832
Number of successful extensions: 19
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 2,362,478
effective HSP length: 31
effective length of database: 2,207,354
effective search space used: 41939726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)