Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_N22
         (152 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0657 + 5674907-5674993,5675615-5676583                           26   3.6  
04_04_0590 + 26457514-26457801,26458849-26459325,26459817-264600...    25   8.3  

>08_01_0657 + 5674907-5674993,5675615-5676583
          Length = 351

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 16  SSWLPSLNRKKLELLGGTCDLAIAVKDAIFVQECVPENL 132
           S+W+  L R  LE  G   D A  V+  I V   +P+N+
Sbjct: 111 SAWVLILRRSALEASGAIVDDAFTVECTITVITEIPDNV 149


>04_04_0590 +
           26457514-26457801,26458849-26459325,26459817-26460027,
           26460219-26460376,26460461-26460531,26460707-26460812,
           26460880-26460966,26461591-26462148,26462245-26462308,
           26463352-26463485,26463568-26463621,26464321-26464417,
           26465620-26465825,26465901-26465984,26466265-26466330,
           26466883-26466956,26467664-26467751,26467830-26467928
          Length = 973

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 59  NNSNFFRFKLGSHDDT 12
           +NSN FR+  GS DDT
Sbjct: 789 SNSNSFRYSGGSRDDT 804


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,232,758
Number of Sequences: 37544
Number of extensions: 59289
Number of successful extensions: 149
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 14,793,348
effective HSP length: 31
effective length of database: 13,629,484
effective search space used: 258960196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)