Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_N22
         (152 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53765| Best HMM Match : 3HCDH_N (HMM E-Value=9.2e-12)               30   0.34 
SB_7778| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   2.4  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.2  
SB_59526| Best HMM Match : Lactamase_B (HMM E-Value=7.9e-12)           25   7.3  
SB_42671| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.7  

>SB_53765| Best HMM Match : 3HCDH_N (HMM E-Value=9.2e-12)
          Length = 120

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 12/13 (92%), Positives = 12/13 (92%)
 Frame = +1

Query: 112 ECVPENLELKKKV 150
           EC PENLELKKKV
Sbjct: 1   ECTPENLELKKKV 13


>SB_7778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 461

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = -2

Query: 148 LSF*VPNFPGRILVRKSHP*RQSLNHRYLPTIPTFSDLNL 29
           LSF  P+F G+  VRK H   +S  H+  P +P   DL+L
Sbjct: 223 LSFMPPSFSGKESVRKKH---KSSPHK-KPAVPPAPDLSL 258


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 70  CDLAIAVKDAIFVQECVPENL 132
           CD+A+ V D  F+ +CV ++L
Sbjct: 826 CDVAVMVSDYCFMADCVSDSL 846


>SB_59526| Best HMM Match : Lactamase_B (HMM E-Value=7.9e-12)
          Length = 282

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +1

Query: 28  PSLNRKKLELLGGTCDLAIAVKDAIFVQECVPENLELKKKV 150
           PS   +K+ +LG TCD + A+++  +  +CV     L+ ++
Sbjct: 230 PSRPGRKVVILGDTCD-SSAIENLAYKADCVIHEATLEDEM 269


>SB_42671| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 451

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 25  LPSL-NRKKLELLGGTCDLAIAVKDAIFVQECVP 123
           LP+L  R  L  +GGT  L  AV   I+ + C+P
Sbjct: 127 LPTLYGRYYLPYMGGTAYLIWAVLPTIYARYCLP 160


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,963,755
Number of Sequences: 59808
Number of extensions: 70451
Number of successful extensions: 162
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 16,821,457
effective HSP length: 30
effective length of database: 15,027,217
effective search space used: 300544340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)