Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0002_N22
         (152 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35750.1 68418.m04281 histidine kinase (AHK2) identical to hi...    28   0.73 
At5g57300.1 68418.m07158 UbiE/COQ5 methyltransferase family prot...    28   0.97 
At2g37990.1 68415.m04663 ribosome biogenesis regulatory protein ...    27   1.7  
At1g21640.1 68414.m02709 ATP-NAD kinase family protein contains ...    25   6.8  
At5g44250.1 68418.m05413 expressed protein contains Pfam PF05705...    25   9.0  

>At5g35750.1 68418.m04281 histidine kinase (AHK2) identical to
           histidine kinase AHK2 [Arabidopsis thaliana]
           gi|13537196|dbj|BAB40774
          Length = 1176

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 25  LPSLNRKKLELLGGTCDLAIAVKDAIFVQECVPENLE 135
           +P   R+K E   G     +  +D   VQ+CVPEN +
Sbjct: 334 VPHSEREKFEKEHGWAIKKMETEDQTVVQDCVPENFD 370


>At5g57300.1 68418.m07158 UbiE/COQ5 methyltransferase family protein
           similar to ubiquinone biosynthesis methyltransferase
           COQ5 [Saccharomyces cerevisiae][SP|P49017],
           ubiquinone/menaquinone biosynthesis methyltransferase
           ubiE [Escherichia coli][SP|P27851]; contains Pfam
           profile PF01209: methlytransferase, UbiE/COQ5 family
          Length = 288

 Score = 27.9 bits (59), Expect = 0.97
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 4   KRCVSSWLPSLNRKKLELLGGTCDLAIAVKDAIF 105
           +R V    P    K L++ GGT D+A  + DA++
Sbjct: 73  ERLVGKLSPFAGMKHLDVAGGTGDVAFRIYDAVY 106


>At2g37990.1 68415.m04663 ribosome biogenesis regulatory protein
           (RRS1) family protein contains Pfam profile PF04939:
           Ribosome biogenesis regulatory protein (RRS1); similar
           to Ribosome biogenesis regulatory protein homolog
           (Swiss-Prot:Q15050) [Homo sapiens]
          Length = 318

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 94  P*RQSLNHRYLPTIPTFSDLNLEAMTTRSV 5
           P +Q  +H+YLP +    D+N E   T +V
Sbjct: 237 PKKQGKHHKYLPVVSGRGDVNAEKEQTNNV 266


>At1g21640.1 68414.m02709 ATP-NAD kinase family protein contains
           similarity to NAD kinase [Homo sapiens]
           gi|20070086|gb|AAM01195; contains Pfam domain, PF01513:
           ATP-NAD kinase
          Length = 985

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 137 SSKFSGTHSCTKIASLTAIAKSQVPPNN 54
           S +F G  S ++   ++   KSQVPP N
Sbjct: 439 SGRFEGDTSASEFNMVSDPLKSQVPPGN 466


>At5g44250.1 68418.m05413 expressed protein contains Pfam PF05705:
           Eukaryotic protein of unknown function (DUF829)
          Length = 403

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 43  KKLELLGGTCDLAIAVKDAIFVQECV 120
           K L++L GTC+  +   D   V+ C+
Sbjct: 104 KVLQILEGTCETGLNPDDCRLVRNCI 129


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,539,467
Number of Sequences: 28952
Number of extensions: 51530
Number of successful extensions: 160
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 12,070,560
effective HSP length: 31
effective length of database: 11,173,048
effective search space used: 212287912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)