Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0002_N21
(443 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0383 + 2990812-2990855,2991364-2991463,2991554-2991622,299... 29 1.7
01_01_0363 + 2850954-2853675,2853819-2854225 29 1.7
03_06_0047 + 31266940-31268394 29 2.2
03_02_0495 - 8879612-8880283,8880369-8880608,8880713-8880775,888... 27 5.1
08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,452... 27 6.8
06_01_0838 - 6360232-6360460,6360571-6360719,6360825-6360933,636... 27 6.8
01_07_0122 - 41196081-41196205,41197561-41198245,41198961-411993... 27 6.8
06_01_0349 + 2529279-2530446,2532232-2533036,2533066-2533106,253... 27 9.0
04_01_0514 + 6738706-6739230 27 9.0
02_05_0722 + 31220798-31220887,31220992-31221036,31221524-312215... 27 9.0
>05_01_0383 +
2990812-2990855,2991364-2991463,2991554-2991622,
2991724-2991960,2992045-2992228,2992307-2992442,
2992529-2992691,2992958-2993108,2993154-2993278,
2993349-2993504,2993792-2993860,2993951-2994019,
2994127-2994264,2994626-2994773,2994856-2994866,
2995212-2995352,2995441-2995569,2995860-2995899,
2996020-2996348,2996902-2996919
Length = 818
Score = 29.1 bits (62), Expect = 1.7
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +2
Query: 65 YTRYISDRRCAN--IRRNSAAVVMRVRKKLKTGLRIRRQDLPQPVPLVLREGQDAQRF 232
Y ++S R AN ++N A+ RV+ +R + DLP L++REG + RF
Sbjct: 508 YKNFVSQRSDANGWYQKNGVAL-FRVQGLKHDCIRAIQVDLPLKQSLLVREGSEPDRF 564
>01_01_0363 + 2850954-2853675,2853819-2854225
Length = 1042
Score = 29.1 bits (62), Expect = 1.7
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -2
Query: 427 GCISATLTSWHSPRCFISRDGANGREHSSEHLLG*VFPS 311
G S TLTSW+S F + +G H ++G PS
Sbjct: 31 GLSSRTLTSWNSSTSFCNWEGVKCSRHRPTRVVGLSLPS 69
>03_06_0047 + 31266940-31268394
Length = 484
Score = 28.7 bits (61), Expect = 2.2
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +3
Query: 141 RNLRPVCGSDGKTYHNQCLLYCERDKTHSDLKIVKEGTCEEADPCVCTF 287
R + C D TY ++CE DK LK+ K ++ P + TF
Sbjct: 368 RRMIKCCQPDCDTYTMMIKMFCENDKVEMALKVWKYMRLKQFLPSMHTF 416
>03_02_0495 -
8879612-8880283,8880369-8880608,8880713-8880775,
8881510-8881620
Length = 361
Score = 27.5 bits (58), Expect = 5.1
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -2
Query: 442 RVQIHGCISATLTSWHS 392
RV+ H CIS+++ WHS
Sbjct: 297 RVKKHACISSSIIGWHS 313
>08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,
4521632-4521723,4522226-4522342,4522641-4522704,
4523175-4523228,4523579-4523666,4523788-4524023,
4525258-4525478,4525634-4525827,4525938-4525995,
4526771-4526824,4526851-4527473,4527580-4527640,
4528417-4528590,4528803-4529063,4529201-4529320,
4529388-4530022,4530062-4530828,4530915-4531012,
4531101-4531155,4531230-4531318
Length = 2010
Score = 27.1 bits (57), Expect = 6.8
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2
Query: 313 SVPQTGAYMKVQTQGSASSHVPS 245
S Q G+ M+ Q+QG ASS +PS
Sbjct: 1668 STVQNGSQMQQQSQGPASSAIPS 1690
>06_01_0838 -
6360232-6360460,6360571-6360719,6360825-6360933,
6361446-6362276,6362865-6362969,6363084-6363180,
6363303-6363341,6363435-6363477
Length = 533
Score = 27.1 bits (57), Expect = 6.8
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 427 GCISATLTSWHSPRCFISRDGANGREHSSE 338
GCI+ ++T H+ CF+ A+G + E
Sbjct: 305 GCIAISMTLHHTSLCFVCSHLASGEKEGDE 334
>01_07_0122 -
41196081-41196205,41197561-41198245,41198961-41199329,
41199405-41199514,41200539-41200833
Length = 527
Score = 27.1 bits (57), Expect = 6.8
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -2
Query: 316 PSVPQTGAYMKVQTQGSASSHVPSFTIFKSLCVLSLSQYKRHWL 185
PSVP+ + T S+ + + T+F + +SLS Y RH L
Sbjct: 291 PSVPRMKQLAQTITNSSSGNLGLNHTVFGRVKQISLSSYLRHSL 334
>06_01_0349 +
2529279-2530446,2532232-2533036,2533066-2533106,
2533219-2533424
Length = 739
Score = 26.6 bits (56), Expect = 9.0
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = -2
Query: 133 AHDDGSXXXXXXXXXAIRNIPSI-FILCYCLWHKIPSFSL 17
+HDDG A +P + I C+ LW+ P F L
Sbjct: 488 SHDDGGFSLMNLFSKATLQLPKLDTIWCHHLWYAAPKFPL 527
>04_01_0514 + 6738706-6739230
Length = 174
Score = 26.6 bits (56), Expect = 9.0
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 150 RPVCGSDGKTYHNQCLLYCERDKTHSDL 233
RP G + T+ + C + D+ HSDL
Sbjct: 117 RPTAGENDTTFSHMCAVMKGMDRMHSDL 144
>02_05_0722 +
31220798-31220887,31220992-31221036,31221524-31221595,
31221743-31221871
Length = 111
Score = 26.6 bits (56), Expect = 9.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 442 RVQIHGCISATLTSWHSPRCFISR 371
R Q+HG ATL +H PR SR
Sbjct: 20 RAQLHGRCRATLGGFHDPRSNSSR 43
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,990,727
Number of Sequences: 37544
Number of extensions: 250926
Number of successful extensions: 799
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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